miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33621 5' -62.3 NC_007605.1 + 63306 0.65 0.677705
Target:  5'- uGUAGCCGCcCGGGUCgaggcagguggGGGCCUg -3'
miRNA:   3'- gCGUCGGUGuGCCCGGaga--------CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 16212 0.66 0.652385
Target:  5'- uCGCGGag--AgGGGCCUCuuUGGGCCCUc -3'
miRNA:   3'- -GCGUCggugUgCCCGGAG--ACCUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 87823 0.66 0.632834
Target:  5'- gGCuccuGCCGCG-GGGCCUCcugccgcgGGGCCUc -3'
miRNA:   3'- gCGu---CGGUGUgCCCGGAGa-------CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 27938 0.66 0.632834
Target:  5'- gGCagAGCCGgGCGauCCUCUGaGACCCUc -3'
miRNA:   3'- gCG--UCGGUgUGCccGGAGAC-CUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 71415 0.66 0.642613
Target:  5'- uGCAGCCAuggaccucucCGCGucgccuuuuguGGCCUCUGGugUa- -3'
miRNA:   3'- gCGUCGGU----------GUGC-----------CCGGAGACCugGga -5'
33621 5' -62.3 NC_007605.1 + 33762 0.66 0.646523
Target:  5'- cCGCGGCCAUugGGcCCagauugagagaccagUCcagGGGCCCg -3'
miRNA:   3'- -GCGUCGGUGugCCcGG---------------AGa--CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 13143 0.66 0.652385
Target:  5'- uCGCGGag--AgGGGCCUCuuUGGGCCCUc -3'
miRNA:   3'- -GCGUCggugUgCCCGGAG--ACCUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 25419 0.66 0.652385
Target:  5'- uCGCGGag--AgGGGCCUCuuUGGGCCCUc -3'
miRNA:   3'- -GCGUCggugUgCCCGGAG--ACCUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 19281 0.66 0.652385
Target:  5'- uCGCGGag--AgGGGCCUCuuUGGGCCCUc -3'
miRNA:   3'- -GCGUCggugUgCCCGGAG--ACCUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 22350 0.66 0.652385
Target:  5'- uCGCGGag--AgGGGCCUCuuUGGGCCCUc -3'
miRNA:   3'- -GCGUCggugUgCCCGGAG--ACCUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 72378 0.66 0.631856
Target:  5'- gGCagGGUCuCGCGGGuCCUCUGGauuagauagucacGCCCa -3'
miRNA:   3'- gCG--UCGGuGUGCCC-GGAGACC-------------UGGGa -5'
33621 5' -62.3 NC_007605.1 + 137114 0.66 0.623054
Target:  5'- aGCAGCC----GGGaaCUCUGGACCCc -3'
miRNA:   3'- gCGUCGGugugCCCg-GAGACCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 15348 0.66 0.646523
Target:  5'- cCGCGGCCAUugGGcCCagauugagagaccagUCcagGGGCCCg -3'
miRNA:   3'- -GCGUCGGUGugCCcGG---------------AGa--CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 12279 0.66 0.646523
Target:  5'- cCGCGGCCAUugGGcCCagauugagagaccagUCcagGGGCCCg -3'
miRNA:   3'- -GCGUCGGUGugCCcGG---------------AGa--CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 166988 0.66 0.662142
Target:  5'- gCGCAGCgACugGcgcaacaccGUCUCUGGGCCg- -3'
miRNA:   3'- -GCGUCGgUGugCc--------CGGAGACCUGGga -5'
33621 5' -62.3 NC_007605.1 + 21486 0.66 0.646523
Target:  5'- cCGCGGCCAUugGGcCCagauugagagaccagUCcagGGGCCCg -3'
miRNA:   3'- -GCGUCGGUGugCCcGG---------------AGa--CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 24555 0.66 0.646523
Target:  5'- cCGCGGCCAUugGGcCCagauugagagaccagUCcagGGGCCCg -3'
miRNA:   3'- -GCGUCGGUGugCCcGG---------------AGa--CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 18417 0.66 0.646523
Target:  5'- cCGCGGCCAUugGGcCCagauugagagaccagUCcagGGGCCCg -3'
miRNA:   3'- -GCGUCGGUGugCCcGG---------------AGa--CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 27624 0.66 0.646523
Target:  5'- cCGCGGCCAUugGGcCCagauugagagaccagUCcagGGGCCCg -3'
miRNA:   3'- -GCGUCGGUGugCCcGG---------------AGa--CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 30693 0.66 0.646523
Target:  5'- cCGCGGCCAUugGGcCCagauugagagaccagUCcagGGGCCCg -3'
miRNA:   3'- -GCGUCGGUGugCCcGG---------------AGa--CCUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.