Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33621 | 5' | -62.3 | NC_007605.1 | + | 163192 | 1.07 | 0.0012 |
Target: 5'- aCGCAGCCACACGGGCCUCUGGACCCUc -3' miRNA: 3'- -GCGUCGGUGUGCCCGGAGACCUGGGA- -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 74106 | 0.81 | 0.08748 |
Target: 5'- aCGCAGCCACgccACGcGGCCUCUGGcauccCCCUg -3' miRNA: 3'- -GCGUCGGUG---UGC-CCGGAGACCu----GGGA- -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 150834 | 0.74 | 0.24962 |
Target: 5'- uCGcCAGCCcC-CGGGCCUUcaUGGGCCCg -3' miRNA: 3'- -GC-GUCGGuGuGCCCGGAG--ACCUGGGa -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 75171 | 0.73 | 0.298994 |
Target: 5'- uGCGGCaGC-CGGaGCaCUCUGGGCCCa -3' miRNA: 3'- gCGUCGgUGuGCC-CG-GAGACCUGGGa -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 68189 | 0.73 | 0.298994 |
Target: 5'- uGgGGCCAUACGaGGCCUucaCUGG-CCCUg -3' miRNA: 3'- gCgUCGGUGUGC-CCGGA---GACCuGGGA- -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 168801 | 0.72 | 0.305671 |
Target: 5'- gGgGGCCGuCGCGGGCCcggUGGGCCCc -3' miRNA: 3'- gCgUCGGU-GUGCCCGGag-ACCUGGGa -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 61528 | 0.72 | 0.311779 |
Target: 5'- cCGCccgGGCCACACGGGCgaagcggCUCgugGGGCUCg -3' miRNA: 3'- -GCG---UCGGUGUGCCCG-------GAGa--CCUGGGa -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 986 | 0.72 | 0.312463 |
Target: 5'- cCGCAGCCcC-CGGGCCcgcGGACCCc -3' miRNA: 3'- -GCGUCGGuGuGCCCGGagaCCUGGGa -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 23738 | 0.72 | 0.326387 |
Target: 5'- gGCAGCCGCAcCGGGCCgguuaUUGGcACCg- -3' miRNA: 3'- gCGUCGGUGU-GCCCGGa----GACC-UGGga -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 164082 | 0.72 | 0.326387 |
Target: 5'- uGUAGCCGCACGGacccggcuGgCUCUGGcuGCCCa -3' miRNA: 3'- gCGUCGGUGUGCC--------CgGAGACC--UGGGa -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 37308 | 0.71 | 0.348126 |
Target: 5'- uGCcGCCACcguGGGCCUCacguagUGGGCCCa -3' miRNA: 3'- gCGuCGGUGug-CCCGGAG------ACCUGGGa -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 7626 | 0.71 | 0.348126 |
Target: 5'- -cCGGCUACGCGGGCCaCaGGugCCUg -3' miRNA: 3'- gcGUCGGUGUGCCCGGaGaCCugGGA- -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 39675 | 0.71 | 0.355599 |
Target: 5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3' miRNA: 3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 39550 | 0.71 | 0.355599 |
Target: 5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3' miRNA: 3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 39050 | 0.71 | 0.355599 |
Target: 5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3' miRNA: 3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 38925 | 0.71 | 0.355599 |
Target: 5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3' miRNA: 3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 38801 | 0.71 | 0.355599 |
Target: 5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3' miRNA: 3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 38676 | 0.71 | 0.355599 |
Target: 5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3' miRNA: 3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 38426 | 0.71 | 0.355599 |
Target: 5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3' miRNA: 3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5' |
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33621 | 5' | -62.3 | NC_007605.1 | + | 38551 | 0.71 | 0.355599 |
Target: 5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3' miRNA: 3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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