miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33621 5' -62.3 NC_007605.1 + 50408 0.71 0.37088
Target:  5'- cCGUGGCCuuugGCACGGGCC--UGGcACCCa -3'
miRNA:   3'- -GCGUCGG----UGUGCCCGGagACC-UGGGa -5'
33621 5' -62.3 NC_007605.1 + 38801 0.71 0.355599
Target:  5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3'
miRNA:   3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5'
33621 5' -62.3 NC_007605.1 + 38925 0.71 0.355599
Target:  5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3'
miRNA:   3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5'
33621 5' -62.3 NC_007605.1 + 39050 0.71 0.355599
Target:  5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3'
miRNA:   3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5'
33621 5' -62.3 NC_007605.1 + 39175 0.71 0.355599
Target:  5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3'
miRNA:   3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5'
33621 5' -62.3 NC_007605.1 + 39300 0.71 0.355599
Target:  5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3'
miRNA:   3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5'
33621 5' -62.3 NC_007605.1 + 39425 0.71 0.355599
Target:  5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3'
miRNA:   3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5'
33621 5' -62.3 NC_007605.1 + 39550 0.71 0.355599
Target:  5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3'
miRNA:   3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5'
33621 5' -62.3 NC_007605.1 + 39675 0.71 0.355599
Target:  5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3'
miRNA:   3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5'
33621 5' -62.3 NC_007605.1 + 38676 0.71 0.355599
Target:  5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3'
miRNA:   3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5'
33621 5' -62.3 NC_007605.1 + 38551 0.71 0.355599
Target:  5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3'
miRNA:   3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5'
33621 5' -62.3 NC_007605.1 + 38426 0.71 0.355599
Target:  5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3'
miRNA:   3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5'
33621 5' -62.3 NC_007605.1 + 74106 0.81 0.08748
Target:  5'- aCGCAGCCACgccACGcGGCCUCUGGcauccCCCUg -3'
miRNA:   3'- -GCGUCGGUG---UGC-CCGGAGACCu----GGGA- -5'
33621 5' -62.3 NC_007605.1 + 150834 0.74 0.24962
Target:  5'- uCGcCAGCCcC-CGGGCCUUcaUGGGCCCg -3'
miRNA:   3'- -GC-GUCGGuGuGCCCGGAG--ACCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 75171 0.73 0.298994
Target:  5'- uGCGGCaGC-CGGaGCaCUCUGGGCCCa -3'
miRNA:   3'- gCGUCGgUGuGCC-CG-GAGACCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 68189 0.73 0.298994
Target:  5'- uGgGGCCAUACGaGGCCUucaCUGG-CCCUg -3'
miRNA:   3'- gCgUCGGUGUGC-CCGGA---GACCuGGGA- -5'
33621 5' -62.3 NC_007605.1 + 168801 0.72 0.305671
Target:  5'- gGgGGCCGuCGCGGGCCcggUGGGCCCc -3'
miRNA:   3'- gCgUCGGU-GUGCCCGGag-ACCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 61528 0.72 0.311779
Target:  5'- cCGCccgGGCCACACGGGCgaagcggCUCgugGGGCUCg -3'
miRNA:   3'- -GCG---UCGGUGUGCCCG-------GAGa--CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 164082 0.72 0.326387
Target:  5'- uGUAGCCGCACGGacccggcuGgCUCUGGcuGCCCa -3'
miRNA:   3'- gCGUCGGUGUGCC--------CgGAGACC--UGGGa -5'
33621 5' -62.3 NC_007605.1 + 38301 0.71 0.355599
Target:  5'- gGCGGCCGCcggUGGGUCcgCUGGGCCgCUg -3'
miRNA:   3'- gCGUCGGUGu--GCCCGGa-GACCUGG-GA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.