miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33621 5' -62.3 NC_007605.1 + 448 0.66 0.642613
Target:  5'- cCGCAGCCcC-CGGaGCCcgcGGACCCc -3'
miRNA:   3'- -GCGUCGGuGuGCC-CGGagaCCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 986 0.72 0.312463
Target:  5'- cCGCAGCCcC-CGGGCCcgcGGACCCc -3'
miRNA:   3'- -GCGUCGGuGuGCCCGGagaCCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 1508 0.66 0.642613
Target:  5'- cCGCAGCCcC-CGGaGCCcgcGGACCCc -3'
miRNA:   3'- -GCGUCGGuGuGCC-CGGagaCCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 2045 0.66 0.642613
Target:  5'- cCGCAGCCcC-CGGaGCCcgcGGACCCc -3'
miRNA:   3'- -GCGUCGGuGuGCC-CGGagaCCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 7626 0.71 0.348126
Target:  5'- -cCGGCUACGCGGGCCaCaGGugCCUg -3'
miRNA:   3'- gcGUCGGUGUGCCCGGaGaCCugGGA- -5'
33621 5' -62.3 NC_007605.1 + 11326 0.66 0.623054
Target:  5'- gGCuggagAGCCuggaACGGGCC-CUGGAUCUg -3'
miRNA:   3'- gCG-----UCGGug--UGCCCGGaGACCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 12279 0.66 0.646523
Target:  5'- cCGCGGCCAUugGGcCCagauugagagaccagUCcagGGGCCCg -3'
miRNA:   3'- -GCGUCGGUGugCCcGG---------------AGa--CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 13143 0.66 0.652385
Target:  5'- uCGCGGag--AgGGGCCUCuuUGGGCCCUc -3'
miRNA:   3'- -GCGUCggugUgCCCGGAG--ACCUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 14364 0.67 0.564732
Target:  5'- cCGCAuGCUgggagaccuuGCGCGGGCC--UGGugCCUg -3'
miRNA:   3'- -GCGU-CGG----------UGUGCCCGGagACCugGGA- -5'
33621 5' -62.3 NC_007605.1 + 15348 0.66 0.646523
Target:  5'- cCGCGGCCAUugGGcCCagauugagagaccagUCcagGGGCCCg -3'
miRNA:   3'- -GCGUCGGUGugCCcGG---------------AGa--CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 16212 0.66 0.652385
Target:  5'- uCGCGGag--AgGGGCCUCuuUGGGCCCUc -3'
miRNA:   3'- -GCGUCggugUgCCCGGAG--ACCUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 18417 0.66 0.646523
Target:  5'- cCGCGGCCAUugGGcCCagauugagagaccagUCcagGGGCCCg -3'
miRNA:   3'- -GCGUCGGUGugCCcGG---------------AGa--CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 18547 0.66 0.662142
Target:  5'- aGCccGGCCACcauucuaagACccaaagugaggGGGCCUgagaCUGGACCCUa -3'
miRNA:   3'- gCG--UCGGUG---------UG-----------CCCGGA----GACCUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 19281 0.66 0.652385
Target:  5'- uCGCGGag--AgGGGCCUCuuUGGGCCCUc -3'
miRNA:   3'- -GCGUCggugUgCCCGGAG--ACCUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 20252 0.69 0.444962
Target:  5'- cCGUGGCCAggUACGGGCUggUGGGCUCc -3'
miRNA:   3'- -GCGUCGGU--GUGCCCGGagACCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 20820 0.67 0.584062
Target:  5'- gGCGGCgucCGCGGGCCgaggggaUGuGGCCCUg -3'
miRNA:   3'- gCGUCGgu-GUGCCCGGag-----AC-CUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 21486 0.66 0.646523
Target:  5'- cCGCGGCCAUugGGcCCagauugagagaccagUCcagGGGCCCg -3'
miRNA:   3'- -GCGUCGGUGugCCcGG---------------AGa--CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 22350 0.66 0.652385
Target:  5'- uCGCGGag--AgGGGCCUCuuUGGGCCCUc -3'
miRNA:   3'- -GCGUCggugUgCCCGGAG--ACCUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 23738 0.72 0.326387
Target:  5'- gGCAGCCGCAcCGGGCCgguuaUUGGcACCg- -3'
miRNA:   3'- gCGUCGGUGU-GCCCGGa----GACC-UGGga -5'
33621 5' -62.3 NC_007605.1 + 24555 0.66 0.646523
Target:  5'- cCGCGGCCAUugGGcCCagauugagagaccagUCcagGGGCCCg -3'
miRNA:   3'- -GCGUCGGUGugCCcGG---------------AGa--CCUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.