miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 3' -60.1 NC_007605.1 + 52931 0.66 0.806976
Target:  5'- uCCUCuCUUGGUCaUC-CUGCGGGGGaCCa -3'
miRNA:   3'- -GGAG-GGACCAG-AGcGGUGUCUCCcGG- -5'
33622 3' -60.1 NC_007605.1 + 66289 0.66 0.806976
Target:  5'- gCC-CCCgUGGgaaCGCCugaugGCGGAGGGCa -3'
miRNA:   3'- -GGaGGG-ACCagaGCGG-----UGUCUCCCGg -5'
33622 3' -60.1 NC_007605.1 + 8852 0.66 0.806976
Target:  5'- -gUCCCaUGuG-CUCGCUcuGC-GAGGGCCg -3'
miRNA:   3'- ggAGGG-AC-CaGAGCGG--UGuCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 167402 0.66 0.806976
Target:  5'- cCCUCCCUGGaUCUUGCCAUcccc-GCa -3'
miRNA:   3'- -GGAGGGACC-AGAGCGGUGucuccCGg -5'
33622 3' -60.1 NC_007605.1 + 169298 0.66 0.80613
Target:  5'- gCCUCgUgucagcGGUCUCuggcccgGCCAcCAGAaGGGCCc -3'
miRNA:   3'- -GGAGgGa-----CCAGAG-------CGGU-GUCU-CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 115313 0.66 0.804434
Target:  5'- gCCgCCUUGGUCUCggccccggcccuaaGUCugAGccccaggcaaAGGGCCg -3'
miRNA:   3'- -GGaGGGACCAGAG--------------CGGugUC----------UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 67013 0.66 0.798452
Target:  5'- ---gCCUGG-CUUcagcgGCUGCGGAGGGCUg -3'
miRNA:   3'- ggagGGACCaGAG-----CGGUGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 120574 0.66 0.798452
Target:  5'- gCUCCC-GGUCccaUGCCACuGGAaaaaGGGCUg -3'
miRNA:   3'- gGAGGGaCCAGa--GCGGUG-UCU----CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 164319 0.66 0.798452
Target:  5'- gCCUCgcaaaCCaGaGUCU-GCgAUAGAGGGCCa -3'
miRNA:   3'- -GGAG-----GGaC-CAGAgCGgUGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 164774 0.66 0.798452
Target:  5'- gCCUCa-UGGUCUCGUCAggcCAGcucacGGGCUu -3'
miRNA:   3'- -GGAGggACCAGAGCGGU---GUCu----CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 89057 0.66 0.798452
Target:  5'- cCCUCCUcuUGaaCagGCCACucGGGGGCCu -3'
miRNA:   3'- -GGAGGG--ACcaGagCGGUGu-CUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 22201 0.66 0.789789
Target:  5'- gUCUCCgUGGaCaCGCCggaccugaaACgAGAGGGCCc -3'
miRNA:   3'- -GGAGGgACCaGaGCGG---------UG-UCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 145540 0.66 0.789789
Target:  5'- cCCUCCCcuuaacagggGGUCUCGC----GGGGuGCCa -3'
miRNA:   3'- -GGAGGGa---------CCAGAGCGguguCUCC-CGG- -5'
33622 3' -60.1 NC_007605.1 + 50670 0.66 0.789789
Target:  5'- cCCgacggCCgUGGggaggCggGUgGCGGAGGGCCg -3'
miRNA:   3'- -GGa----GGgACCa----GagCGgUGUCUCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 45201 0.66 0.789789
Target:  5'- gCCUCC--GGUCUgGUgAUGGccAGGGCCa -3'
miRNA:   3'- -GGAGGgaCCAGAgCGgUGUC--UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 9965 0.66 0.789789
Target:  5'- gCCUggcaaCCUGGUCcuuaCGCCaaGCAGAGGcucaacaacGCCa -3'
miRNA:   3'- -GGAg----GGACCAGa---GCGG--UGUCUCC---------CGG- -5'
33622 3' -60.1 NC_007605.1 + 144276 0.66 0.789789
Target:  5'- aCCUCCCaaGGUCUCucacccuggGUaCACAGguGGGGCg -3'
miRNA:   3'- -GGAGGGa-CCAGAG---------CG-GUGUC--UCCCGg -5'
33622 3' -60.1 NC_007605.1 + 132379 0.66 0.789789
Target:  5'- uCCUCCUgacauUUUCGCCAgccgcCGGGcGGGCCg -3'
miRNA:   3'- -GGAGGGacc--AGAGCGGU-----GUCU-CCCGG- -5'
33622 3' -60.1 NC_007605.1 + 151362 0.66 0.787165
Target:  5'- aCCUCCCagagGGagcccaccagcccgUacCUgGCCACGGccAGGGCCu -3'
miRNA:   3'- -GGAGGGa---CC--------------A--GAgCGGUGUC--UCCCGG- -5'
33622 3' -60.1 NC_007605.1 + 168910 0.66 0.780997
Target:  5'- gCCgCCCUGGUCUgaaagGCCuguugGCGccGGGCCg -3'
miRNA:   3'- -GGaGGGACCAGAg----CGG-----UGUcuCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.