Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33622 | 3' | -60.1 | NC_007605.1 | + | 52931 | 0.66 | 0.806976 |
Target: 5'- uCCUCuCUUGGUCaUC-CUGCGGGGGaCCa -3' miRNA: 3'- -GGAG-GGACCAG-AGcGGUGUCUCCcGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 66289 | 0.66 | 0.806976 |
Target: 5'- gCC-CCCgUGGgaaCGCCugaugGCGGAGGGCa -3' miRNA: 3'- -GGaGGG-ACCagaGCGG-----UGUCUCCCGg -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 8852 | 0.66 | 0.806976 |
Target: 5'- -gUCCCaUGuG-CUCGCUcuGC-GAGGGCCg -3' miRNA: 3'- ggAGGG-AC-CaGAGCGG--UGuCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 167402 | 0.66 | 0.806976 |
Target: 5'- cCCUCCCUGGaUCUUGCCAUcccc-GCa -3' miRNA: 3'- -GGAGGGACC-AGAGCGGUGucuccCGg -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 169298 | 0.66 | 0.80613 |
Target: 5'- gCCUCgUgucagcGGUCUCuggcccgGCCAcCAGAaGGGCCc -3' miRNA: 3'- -GGAGgGa-----CCAGAG-------CGGU-GUCU-CCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 115313 | 0.66 | 0.804434 |
Target: 5'- gCCgCCUUGGUCUCggccccggcccuaaGUCugAGccccaggcaaAGGGCCg -3' miRNA: 3'- -GGaGGGACCAGAG--------------CGGugUC----------UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 67013 | 0.66 | 0.798452 |
Target: 5'- ---gCCUGG-CUUcagcgGCUGCGGAGGGCUg -3' miRNA: 3'- ggagGGACCaGAG-----CGGUGUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 120574 | 0.66 | 0.798452 |
Target: 5'- gCUCCC-GGUCccaUGCCACuGGAaaaaGGGCUg -3' miRNA: 3'- gGAGGGaCCAGa--GCGGUG-UCU----CCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 164319 | 0.66 | 0.798452 |
Target: 5'- gCCUCgcaaaCCaGaGUCU-GCgAUAGAGGGCCa -3' miRNA: 3'- -GGAG-----GGaC-CAGAgCGgUGUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 164774 | 0.66 | 0.798452 |
Target: 5'- gCCUCa-UGGUCUCGUCAggcCAGcucacGGGCUu -3' miRNA: 3'- -GGAGggACCAGAGCGGU---GUCu----CCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 89057 | 0.66 | 0.798452 |
Target: 5'- cCCUCCUcuUGaaCagGCCACucGGGGGCCu -3' miRNA: 3'- -GGAGGG--ACcaGagCGGUGu-CUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 22201 | 0.66 | 0.789789 |
Target: 5'- gUCUCCgUGGaCaCGCCggaccugaaACgAGAGGGCCc -3' miRNA: 3'- -GGAGGgACCaGaGCGG---------UG-UCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 145540 | 0.66 | 0.789789 |
Target: 5'- cCCUCCCcuuaacagggGGUCUCGC----GGGGuGCCa -3' miRNA: 3'- -GGAGGGa---------CCAGAGCGguguCUCC-CGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 50670 | 0.66 | 0.789789 |
Target: 5'- cCCgacggCCgUGGggaggCggGUgGCGGAGGGCCg -3' miRNA: 3'- -GGa----GGgACCa----GagCGgUGUCUCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 45201 | 0.66 | 0.789789 |
Target: 5'- gCCUCC--GGUCUgGUgAUGGccAGGGCCa -3' miRNA: 3'- -GGAGGgaCCAGAgCGgUGUC--UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 9965 | 0.66 | 0.789789 |
Target: 5'- gCCUggcaaCCUGGUCcuuaCGCCaaGCAGAGGcucaacaacGCCa -3' miRNA: 3'- -GGAg----GGACCAGa---GCGG--UGUCUCC---------CGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 144276 | 0.66 | 0.789789 |
Target: 5'- aCCUCCCaaGGUCUCucacccuggGUaCACAGguGGGGCg -3' miRNA: 3'- -GGAGGGa-CCAGAG---------CG-GUGUC--UCCCGg -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 132379 | 0.66 | 0.789789 |
Target: 5'- uCCUCCUgacauUUUCGCCAgccgcCGGGcGGGCCg -3' miRNA: 3'- -GGAGGGacc--AGAGCGGU-----GUCU-CCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 151362 | 0.66 | 0.787165 |
Target: 5'- aCCUCCCagagGGagcccaccagcccgUacCUgGCCACGGccAGGGCCu -3' miRNA: 3'- -GGAGGGa---CC--------------A--GAgCGGUGUC--UCCCGG- -5' |
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33622 | 3' | -60.1 | NC_007605.1 | + | 168910 | 0.66 | 0.780997 |
Target: 5'- gCCgCCCUGGUCUgaaagGCCuguugGCGccGGGCCg -3' miRNA: 3'- -GGaGGGACCAGAg----CGG-----UGUcuCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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