miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33623 5' -60.6 NC_007605.1 + 136389 0.66 0.79651
Target:  5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3'
miRNA:   3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5'
33623 5' -60.6 NC_007605.1 + 157871 0.66 0.79651
Target:  5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3'
miRNA:   3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5'
33623 5' -60.6 NC_007605.1 + 151733 0.66 0.79651
Target:  5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3'
miRNA:   3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5'
33623 5' -60.6 NC_007605.1 + 136556 0.66 0.79651
Target:  5'- gGCCCGCG-GGCgGGgaCCCGG-GUGc -3'
miRNA:   3'- -CGGGCGCaUCGgCCagGGGUCaCACc -5'
33623 5' -60.6 NC_007605.1 + 139458 0.66 0.79651
Target:  5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3'
miRNA:   3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5'
33623 5' -60.6 NC_007605.1 + 148665 0.66 0.79651
Target:  5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3'
miRNA:   3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5'
33623 5' -60.6 NC_007605.1 + 142527 0.66 0.79651
Target:  5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3'
miRNA:   3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5'
33623 5' -60.6 NC_007605.1 + 145596 0.66 0.79651
Target:  5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3'
miRNA:   3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5'
33623 5' -60.6 NC_007605.1 + 154802 0.66 0.79651
Target:  5'- cGCCCGgGggucgGGCUGGgCCgCCAGgg-GGg -3'
miRNA:   3'- -CGGGCgCa----UCGGCCaGG-GGUCacaCC- -5'
33623 5' -60.6 NC_007605.1 + 33899 0.66 0.782636
Target:  5'- cGCCCGgaGUggGGCCGGUCggcugggcuggccggCCCGGgucUGGg -3'
miRNA:   3'- -CGGGCg-CA--UCGGCCAG---------------GGGUCac-ACC- -5'
33623 5' -60.6 NC_007605.1 + 115346 0.66 0.779118
Target:  5'- aGCCCcagGCaaagGGCCGGaCuCCCAGcGUGGc -3'
miRNA:   3'- -CGGG---CGca--UCGGCCaG-GGGUCaCACC- -5'
33623 5' -60.6 NC_007605.1 + 115870 0.66 0.770239
Target:  5'- gGCCgGUGUGGCCucGG-CCCCAGg---- -3'
miRNA:   3'- -CGGgCGCAUCGG--CCaGGGGUCacacc -5'
33623 5' -60.6 NC_007605.1 + 39158 0.66 0.76125
Target:  5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3'
miRNA:   3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5'
33623 5' -60.6 NC_007605.1 + 38284 0.66 0.76125
Target:  5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3'
miRNA:   3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5'
33623 5' -60.6 NC_007605.1 + 38409 0.66 0.76125
Target:  5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3'
miRNA:   3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5'
33623 5' -60.6 NC_007605.1 + 38659 0.66 0.76125
Target:  5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3'
miRNA:   3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5'
33623 5' -60.6 NC_007605.1 + 38784 0.66 0.76125
Target:  5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3'
miRNA:   3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5'
33623 5' -60.6 NC_007605.1 + 39533 0.66 0.76125
Target:  5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3'
miRNA:   3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5'
33623 5' -60.6 NC_007605.1 + 39408 0.66 0.76125
Target:  5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3'
miRNA:   3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5'
33623 5' -60.6 NC_007605.1 + 39283 0.66 0.76125
Target:  5'- cGCuCCGgGggcAGCCGGgcggCCgCCGGUG-GGu -3'
miRNA:   3'- -CG-GGCgCa--UCGGCCa---GG-GGUCACaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.