miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33624 5' -70.5 NC_007605.1 + 12151 0.66 0.353735
Target:  5'- gCC-CGGCCCgUCCGGCgCCCUCucggaCGCGCu -3'
miRNA:   3'- gGGcGCCGGG-GGGUCG-GGGGG-----GCGUG- -5'
33624 5' -70.5 NC_007605.1 + 118536 0.66 0.353735
Target:  5'- cCCUGCGaCCCCCUuaacccGGCCUacguCUCCGCAg -3'
miRNA:   3'- -GGGCGCcGGGGGG------UCGGG----GGGGCGUg -5'
33624 5' -70.5 NC_007605.1 + 123867 0.66 0.353735
Target:  5'- gCCCaGCggacaaGGCCCCCgGGCCUCUCCa--- -3'
miRNA:   3'- -GGG-CG------CCGGGGGgUCGGGGGGGcgug -5'
33624 5' -70.5 NC_007605.1 + 87771 0.66 0.353029
Target:  5'- gCCGCggGGCCUCCUgccgcggGGCCUCCugCCGCGg -3'
miRNA:   3'- gGGCG--CCGGGGGG-------UCGGGGG--GGCGUg -5'
33624 5' -70.5 NC_007605.1 + 23757 0.66 0.351618
Target:  5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3'
miRNA:   3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5'
33624 5' -70.5 NC_007605.1 + 17619 0.66 0.351618
Target:  5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3'
miRNA:   3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5'
33624 5' -70.5 NC_007605.1 + 20688 0.66 0.351618
Target:  5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3'
miRNA:   3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5'
33624 5' -70.5 NC_007605.1 + 14550 0.66 0.351618
Target:  5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3'
miRNA:   3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5'
33624 5' -70.5 NC_007605.1 + 32963 0.66 0.351618
Target:  5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3'
miRNA:   3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5'
33624 5' -70.5 NC_007605.1 + 26826 0.66 0.351618
Target:  5'- aCCGaagugaaGGCCCuggaccaacccggcCCgGGCCCCCCgGUAUc -3'
miRNA:   3'- gGGCg------CCGGG--------------GGgUCGGGGGGgCGUG- -5'
33624 5' -70.5 NC_007605.1 + 48850 0.66 0.346714
Target:  5'- gCUgGCGGCCCCgaauccgggCAGUgCUgCCGCACa -3'
miRNA:   3'- -GGgCGCCGGGGg--------GUCGgGGgGGCGUG- -5'
33624 5' -70.5 NC_007605.1 + 118669 0.66 0.346714
Target:  5'- cCCCaGcCGGaCgCCCCCaAGCUauugguCCCCCGCAg -3'
miRNA:   3'- -GGG-C-GCC-G-GGGGG-UCGG------GGGGGCGUg -5'
33624 5' -70.5 NC_007605.1 + 70759 0.66 0.346714
Target:  5'- aCCGCuucgucGUCCCCagggCGGCCauaauggaCCCCGCGCa -3'
miRNA:   3'- gGGCGc-----CGGGGG----GUCGGg-------GGGGCGUG- -5'
33624 5' -70.5 NC_007605.1 + 34838 0.66 0.34255
Target:  5'- cCuuGCGGUagaggguggcguccuCCCCCGGgaauagCCCCCCGCc- -3'
miRNA:   3'- -GggCGCCG---------------GGGGGUCg-----GGGGGGCGug -5'
33624 5' -70.5 NC_007605.1 + 114104 0.66 0.339793
Target:  5'- cCCCGCaaucaGCCgCCCCGGCUCCUUCucCACu -3'
miRNA:   3'- -GGGCGc----CGG-GGGGUCGGGGGGGc-GUG- -5'
33624 5' -70.5 NC_007605.1 + 11904 0.66 0.339793
Target:  5'- gCCGUGGCUCCCggggccacggagCGGCUCUUCUGCGg -3'
miRNA:   3'- gGGCGCCGGGGG------------GUCGGGGGGGCGUg -5'
33624 5' -70.5 NC_007605.1 + 66262 0.66 0.339793
Target:  5'- gCCCGCuGCCaCCUCucugccaggGGCgCCCCCGUg- -3'
miRNA:   3'- -GGGCGcCGG-GGGG---------UCGgGGGGGCGug -5'
33624 5' -70.5 NC_007605.1 + 31911 0.66 0.339793
Target:  5'- cCCCcCaGCCUgaggCCCAGUCUCCuuGCACu -3'
miRNA:   3'- -GGGcGcCGGG----GGGUCGGGGGggCGUG- -5'
33624 5' -70.5 NC_007605.1 + 162800 0.66 0.337737
Target:  5'- aCUgGCGGCCgCCCCcGCCacguagcugcccguCUCCgGCACc -3'
miRNA:   3'- -GGgCGCCGG-GGGGuCGG--------------GGGGgCGUG- -5'
33624 5' -70.5 NC_007605.1 + 75074 0.66 0.332973
Target:  5'- aCCC-CGGCCUCCaCuGCCUCCUCG-ACc -3'
miRNA:   3'- -GGGcGCCGGGGG-GuCGGGGGGGCgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.