miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 87791 0.66 0.512666
Target:  5'- gGgGCCUCCuGCCGCgggGCCuccuGCCGcggGGCu -3'
miRNA:   3'- gCgCGGGGGcCGGCG---CGGu---CGGU---UCG- -5'
33625 5' -66.2 NC_007605.1 + 48855 0.66 0.512666
Target:  5'- aCGCuGacaCCCUGGCCGCGCC--CCAGu- -3'
miRNA:   3'- -GCG-Cg--GGGGCCGGCGCGGucGGUUcg -5'
33625 5' -66.2 NC_007605.1 + 104614 0.66 0.512666
Target:  5'- aGC-CCUCCGcaGCCGCugaAGCCAGGCu -3'
miRNA:   3'- gCGcGGGGGC--CGGCGcggUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 160706 0.66 0.512666
Target:  5'- gGCGUacaCCUGGCUGUacGCC-GCCGccAGCa -3'
miRNA:   3'- gCGCGg--GGGCCGGCG--CGGuCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 68292 0.66 0.512666
Target:  5'- gGCGCuuagCCUCuGCCGCauuCCGGCCGuuAGCg -3'
miRNA:   3'- gCGCG----GGGGcCGGCGc--GGUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 61916 0.66 0.512666
Target:  5'- aGgGCCCCUgagGGCUccaaaaGCCggAGCCGGGCg -3'
miRNA:   3'- gCgCGGGGG---CCGGcg----CGG--UCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 159470 0.66 0.512666
Target:  5'- aGCGCgUCCGaGaggGCGCCggacgGGCCGGGCu -3'
miRNA:   3'- gCGCGgGGGC-Cgg-CGCGG-----UCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 115181 0.66 0.511762
Target:  5'- aGUGCCCCCGacCCGacccccacagugcCGCCAGuCCcuGCu -3'
miRNA:   3'- gCGCGGGGGCc-GGC-------------GCGGUC-GGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 59032 0.66 0.503652
Target:  5'- uGgGCCUgguugCacgaGGCCGUGCCuaggaugcggagGGCCGAGCc -3'
miRNA:   3'- gCgCGGG-----Gg---CCGGCGCGG------------UCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 134155 0.66 0.503652
Target:  5'- -cCGCCaaCCUGGCCGaGgCGGCCAcccGGCg -3'
miRNA:   3'- gcGCGG--GGGCCGGCgCgGUCGGU---UCG- -5'
33625 5' -66.2 NC_007605.1 + 140717 0.66 0.500961
Target:  5'- cCGgGCCaCCCGGCgGaGCCAGgCCccuccugagacagcAGGCu -3'
miRNA:   3'- -GCgCGG-GGGCCGgCgCGGUC-GG--------------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 32996 0.66 0.494707
Target:  5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3'
miRNA:   3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 45452 0.66 0.494707
Target:  5'- -uCGCUCuuGGCCGgGCCGGgcccCCGGGg -3'
miRNA:   3'- gcGCGGGggCCGGCgCGGUC----GGUUCg -5'
33625 5' -66.2 NC_007605.1 + 37389 0.66 0.494707
Target:  5'- gGCGCCCggcauaCCaGCUGaCGCCAuGgCAGGCu -3'
miRNA:   3'- gCGCGGG------GGcCGGC-GCGGU-CgGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 17652 0.66 0.494707
Target:  5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3'
miRNA:   3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 20721 0.66 0.494707
Target:  5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3'
miRNA:   3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 26859 0.66 0.494707
Target:  5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3'
miRNA:   3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 123296 0.66 0.494707
Target:  5'- uGCuGCCCCCgGGCCucuuggaauGCaGCUggGGCCAGGg -3'
miRNA:   3'- gCG-CGGGGG-CCGG---------CG-CGG--UCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 5017 0.66 0.494707
Target:  5'- -cUGCCCUggcaGGCCGUGCCA-CCGuGGCg -3'
miRNA:   3'- gcGCGGGGg---CCGGCGCGGUcGGU-UCG- -5'
33625 5' -66.2 NC_007605.1 + 14583 0.66 0.494707
Target:  5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3'
miRNA:   3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.