miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33628 3' -57.7 NC_007605.1 + 136513 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 34381 0.71 0.591325
Target:  5'- aGGUGGGcUGACAcagacuuggccuuGGGGGUGGuGGGCu -3'
miRNA:   3'- cCCAUCUuACUGU-------------CCCCCGCC-CCUGu -5'
33628 3' -57.7 NC_007605.1 + 110851 0.7 0.682079
Target:  5'- aGGGUgcAGAA-GACgaAGaGGGCGGGGGCc -3'
miRNA:   3'- -CCCA--UCUUaCUG--UCcCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 131801 0.66 0.882497
Target:  5'- gGGGaGGGAUcGGCGGggcuGGGGUccaGGGGACc -3'
miRNA:   3'- -CCCaUCUUA-CUGUC----CCCCG---CCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 148788 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 151857 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 157995 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 10812 0.79 0.226619
Target:  5'- uGGGUGGAGgagGGCAGGGcucCGGGGGCAg -3'
miRNA:   3'- -CCCAUCUUa--CUGUCCCcc-GCCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 135177 0.74 0.467502
Target:  5'- uGGUGGGGguGguGGGGGCGGGGGu- -3'
miRNA:   3'- cCCAUCUUacUguCCCCCGCCCCUgu -5'
33628 3' -57.7 NC_007605.1 + 128065 0.72 0.559696
Target:  5'- cGGGUGGAA--GCAuGGGGGaaaccugcgaaacuUGGGGGCAg -3'
miRNA:   3'- -CCCAUCUUacUGU-CCCCC--------------GCCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 120288 0.73 0.485923
Target:  5'- aGGGgAGAcgGAcCAGGGGGaaaaGGGGAgCAc -3'
miRNA:   3'- -CCCaUCUuaCU-GUCCCCCg---CCCCU-GU- -5'
33628 3' -57.7 NC_007605.1 + 135263 0.74 0.430911
Target:  5'- gGGGUGGug-GugGGGGGGguggugggaguggUGGGGGCAc -3'
miRNA:   3'- -CCCAUCuuaCugUCCCCC-------------GCCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 139582 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 109494 0.72 0.523747
Target:  5'- uGGUGGAGcacAguGGGGGCGGGGcCGg -3'
miRNA:   3'- cCCAUCUUac-UguCCCCCGCCCCuGU- -5'
33628 3' -57.7 NC_007605.1 + 142651 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 131640 0.77 0.320464
Target:  5'- cGGGUGGGAgcaGGgAGGGGGCGucccGGGACc -3'
miRNA:   3'- -CCCAUCUUa--CUgUCCCCCGC----CCCUGu -5'
33628 3' -57.7 NC_007605.1 + 70904 0.72 0.533382
Target:  5'- cGGGgaaccgGGGGaGAU-GGGGGCGGGGugAc -3'
miRNA:   3'- -CCCa-----UCUUaCUGuCCCCCGCCCCugU- -5'
33628 3' -57.7 NC_007605.1 + 55028 0.7 0.646237
Target:  5'- gGGGUGGAAUgucagaccaagGccgauugagccucccGCGGGGGGagGGGGGCAc -3'
miRNA:   3'- -CCCAUCUUA-----------C---------------UGUCCCCCg-CCCCUGU- -5'
33628 3' -57.7 NC_007605.1 + 145719 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33628 3' -57.7 NC_007605.1 + 154926 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.