miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33634 3' -54.9 NC_007605.1 + 69755 0.66 0.963103
Target:  5'- --gGACCgaGGCC-GGCGUGgggugaacaggaaugGCCGAGGa -3'
miRNA:   3'- ccaCUGGg-UCGGuUCGCAC---------------UGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 80170 0.66 0.961742
Target:  5'- aGGUGugUCAGCCaAAGag-GAUCAGGc -3'
miRNA:   3'- -CCACugGGUCGG-UUCgcaCUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 140618 0.66 0.960698
Target:  5'- --gGACCCAGCCcugGAGCucgggggcggccggGUGGCCcaccGGGu -3'
miRNA:   3'- ccaCUGGGUCGG---UUCG--------------CACUGGu---UCC- -5'
33634 3' -54.9 NC_007605.1 + 7815 0.66 0.959635
Target:  5'- aGG-GGCCgGGUCucgaggcccucuguGGCGaGACCAGGGa -3'
miRNA:   3'- -CCaCUGGgUCGGu-------------UCGCaCUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 68189 0.66 0.958186
Target:  5'- uGG-GGCCauacgaGGCCuucacuGGCccuGUGGCCAAGGc -3'
miRNA:   3'- -CCaCUGGg-----UCGGu-----UCG---CACUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 12123 0.66 0.958186
Target:  5'- aGGUGcCCCGGCCG-GCuggGGCaCGAGa -3'
miRNA:   3'- -CCACuGGGUCGGUuCGca-CUG-GUUCc -5'
33634 3' -54.9 NC_007605.1 + 65528 0.66 0.957819
Target:  5'- gGGUGcaggGCCUGGCCGAugucuuuGCG-GACCuGGGc -3'
miRNA:   3'- -CCAC----UGGGUCGGUU-------CGCaCUGGuUCC- -5'
33634 3' -54.9 NC_007605.1 + 142046 0.66 0.955948
Target:  5'- aGGUGGCCUAGCaacGCGaacccccuugggcccUGACCuuuGGu -3'
miRNA:   3'- -CCACUGGGUCGguuCGC---------------ACUGGuu-CC- -5'
33634 3' -54.9 NC_007605.1 + 151253 0.66 0.955948
Target:  5'- aGGUGGCCUAGCaacGCGaacccccuugggcccUGACCuuuGGu -3'
miRNA:   3'- -CCACUGGGUCGguuCGC---------------ACUGGuu-CC- -5'
33634 3' -54.9 NC_007605.1 + 157391 0.66 0.955948
Target:  5'- aGGUGGCCUAGCaacGCGaacccccuugggcccUGACCuuuGGu -3'
miRNA:   3'- -CCACUGGGUCGguuCGC---------------ACUGGuu-CC- -5'
33634 3' -54.9 NC_007605.1 + 145115 0.66 0.955948
Target:  5'- aGGUGGCCUAGCaacGCGaacccccuugggcccUGACCuuuGGu -3'
miRNA:   3'- -CCACUGGGUCGguuCGC---------------ACUGGuu-CC- -5'
33634 3' -54.9 NC_007605.1 + 148184 0.66 0.955948
Target:  5'- aGGUGGCCUAGCaacGCGaacccccuugggcccUGACCuuuGGu -3'
miRNA:   3'- -CCACUGGGUCGguuCGC---------------ACUGGuu-CC- -5'
33634 3' -54.9 NC_007605.1 + 138977 0.66 0.955948
Target:  5'- aGGUGGCCUAGCaacGCGaacccccuugggcccUGACCuuuGGu -3'
miRNA:   3'- -CCACUGGGUCGguuCGC---------------ACUGGuu-CC- -5'
33634 3' -54.9 NC_007605.1 + 154322 0.66 0.955948
Target:  5'- aGGUGGCCUAGCaacGCGaacccccuugggcccUGACCuuuGGu -3'
miRNA:   3'- -CCACUGGGUCGguuCGC---------------ACUGGuu-CC- -5'
33634 3' -54.9 NC_007605.1 + 167434 0.66 0.954412
Target:  5'- uGUGugCCAGUUAAG-GUGauuaGCUAAGGc -3'
miRNA:   3'- cCACugGGUCGGUUCgCAC----UGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 158840 0.66 0.954412
Target:  5'- gGGcUGACCgCGuccGCCcGGCGcagGAUCAAGGa -3'
miRNA:   3'- -CC-ACUGG-GU---CGGuUCGCa--CUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 147079 0.66 0.954412
Target:  5'- uGUGACCCuGCaAAGCuacGUGgggaugagcaGCCAGGGa -3'
miRNA:   3'- cCACUGGGuCGgUUCG---CAC----------UGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 12210 0.66 0.950412
Target:  5'- aGGUGGCCa--CCGAGgGUcuGGCCAAGc -3'
miRNA:   3'- -CCACUGGgucGGUUCgCA--CUGGUUCc -5'
33634 3' -54.9 NC_007605.1 + 45458 0.66 0.950412
Target:  5'- -uUGGCCgGGCCGGGCcc--CCGGGGg -3'
miRNA:   3'- ccACUGGgUCGGUUCGcacuGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 165976 0.66 0.950412
Target:  5'- gGGcGACCguGCCuga-GUGACCAuAGGu -3'
miRNA:   3'- -CCaCUGGguCGGuucgCACUGGU-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.