Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 3507 | 5' | -53.1 | NC_001623.1 | + | 75922 | 0.68 | 0.898361 |
|
Target: 5'- cGCCAGCAccGCCUcgaagcgcUCgGGCGUuggucacgucaaagAAACGCa -3' miRNA: 3'- -CGGUCGUucUGGA--------AG-CCGCG--------------UUUGCG- -5' |
|||||||
| 3507 | 5' | -53.1 | NC_001623.1 | + | 2148 | 0.68 | 0.912999 |
|
Target: 5'- -gCAGaCGGcGCCggucUCGGCGCAAGCGg -3' miRNA: 3'- cgGUC-GUUcUGGa---AGCCGCGUUUGCg -5' |
|||||||
| 3507 | 5' | -53.1 | NC_001623.1 | + | 61499 | 0.68 | 0.918952 |
|
Target: 5'- gGCUaAGCGuuaaACCUUCGGCGCcgccCGCc -3' miRNA: 3'- -CGG-UCGUuc--UGGAAGCCGCGuuu-GCG- -5' |
|||||||
| 3507 | 5' | -53.1 | NC_001623.1 | + | 106442 | 0.67 | 0.930099 |
|
Target: 5'- uGCCAGau-GGCCgccgUCGGUGUcuGCGa -3' miRNA: 3'- -CGGUCguuCUGGa---AGCCGCGuuUGCg -5' |
|||||||
| 3507 | 5' | -53.1 | NC_001623.1 | + | 120563 | 0.67 | 0.940237 |
|
Target: 5'- cUCGGC-AGACUgaacuuggguUUCGGCGCcuucACGCa -3' miRNA: 3'- cGGUCGuUCUGG----------AAGCCGCGuu--UGCG- -5' |
|||||||
| 3507 | 5' | -53.1 | NC_001623.1 | + | 75485 | 0.67 | 0.949374 |
|
Target: 5'- cGCCuGCAAcACCa--GGCGCAGgaccugccacuGCGCc -3' miRNA: 3'- -CGGuCGUUcUGGaagCCGCGUU-----------UGCG- -5' |
|||||||
| 3507 | 5' | -53.1 | NC_001623.1 | + | 94831 | 0.73 | 0.655297 |
|
Target: 5'- aGCCGaauuuuuuuGUAGGGCUcugcuuuaUUCGGCGCAGACGa -3' miRNA: 3'- -CGGU---------CGUUCUGG--------AAGCCGCGUUUGCg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home