miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3520 5' -46.6 NC_001623.1 + 108609 0.75 0.908366
Target:  5'- cACCAguaauugcuACAACAACAGCaucuacaaagaagGGCGUugGGUGGCc -3'
miRNA:   3'- -UGGU---------UGUUGUUGUUG-------------UCGUA--UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 23473 0.68 0.997828
Target:  5'- uGCCGAC-ACGGCAuaagcACGGCGUcGcguUGGCg -3'
miRNA:   3'- -UGGUUGuUGUUGU-----UGUCGUAuC---ACCG- -5'
3520 5' -46.6 NC_001623.1 + 5961 0.67 0.999014
Target:  5'- aGCCGAC-ACAAUuaauaGGCGUcguGUGGCu -3'
miRNA:   3'- -UGGUUGuUGUUGuug--UCGUAu--CACCG- -5'
3520 5' -46.6 NC_001623.1 + 66292 0.66 0.999867
Target:  5'- cGCCA--AACAACu-CAGUcuggccguccaguacAUGGUGGCg -3'
miRNA:   3'- -UGGUugUUGUUGuuGUCG---------------UAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 16598 0.72 0.9714
Target:  5'- uCCGAaggcagaAAUAGCAGCAGCGUGGUuGCc -3'
miRNA:   3'- uGGUUg------UUGUUGUUGUCGUAUCAcCG- -5'
3520 5' -46.6 NC_001623.1 + 20428 0.72 0.977094
Target:  5'- gAUCAuuGCAGCGACAAUAGCgAUaauaaccacGGUGGUa -3'
miRNA:   3'- -UGGU--UGUUGUUGUUGUCG-UA---------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 64097 0.71 0.985919
Target:  5'- aACCuau-ACAAUAGCGGCGUgccuuuacaaaaAGUGGCc -3'
miRNA:   3'- -UGGuuguUGUUGUUGUCGUA------------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 11248 0.71 0.985919
Target:  5'- aACCGuuggACGACGGCGGCGGCAgGGaaugGGUc -3'
miRNA:   3'- -UGGU----UGUUGUUGUUGUCGUaUCa---CCG- -5'
3520 5' -46.6 NC_001623.1 + 126014 0.69 0.994344
Target:  5'- uUCGACGGuCAGCAACAGaguuaaauauugAGUGGCu -3'
miRNA:   3'- uGGUUGUU-GUUGUUGUCgua---------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 62878 0.68 0.997828
Target:  5'- cGCCGGCAACAA--GCGGCgAUaauaaucgaaaAGUGGUc -3'
miRNA:   3'- -UGGUUGUUGUUguUGUCG-UA-----------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 32017 0.69 0.995177
Target:  5'- gUCGGCGuUAACGACGGUAUcaaacgaccaaugccGGUGGCu -3'
miRNA:   3'- uGGUUGUuGUUGUUGUCGUA---------------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 75675 0.71 0.98765
Target:  5'- cCUAACGcuACucugGGCGGCGGCGcAGUGGCa -3'
miRNA:   3'- uGGUUGU--UG----UUGUUGUCGUaUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 42495 0.74 0.9332
Target:  5'- gGCCGACGACGAC----GCGUacacGGUGGCg -3'
miRNA:   3'- -UGGUUGUUGUUGuuguCGUA----UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 76925 0.69 0.996885
Target:  5'- cACCAACGGCAcCAAC-GCGU--UGGUa -3'
miRNA:   3'- -UGGUUGUUGUuGUUGuCGUAucACCG- -5'
3520 5' -46.6 NC_001623.1 + 7079 0.73 0.957091
Target:  5'- uACCAGCGuuuGCAGCguAGCAUuuguGGUGGCc -3'
miRNA:   3'- -UGGUUGUuguUGUUG--UCGUA----UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 79600 0.71 0.98765
Target:  5'- cGCUAACGuACAACGAC-GCu--GUGGCc -3'
miRNA:   3'- -UGGUUGU-UGUUGUUGuCGuauCACCG- -5'
3520 5' -46.6 NC_001623.1 + 41166 0.69 0.996885
Target:  5'- --aAACu-CGACGcCAGCAUGGUGGUu -3'
miRNA:   3'- uggUUGuuGUUGUuGUCGUAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 8560 0.68 0.998519
Target:  5'- cCUAAUAACGACGuuguCGG-AUGGUGGUa -3'
miRNA:   3'- uGGUUGUUGUUGUu---GUCgUAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 131523 0.73 0.961052
Target:  5'- aGCC-GCAGCAGCAGCAGCAgca--GCa -3'
miRNA:   3'- -UGGuUGUUGUUGUUGUCGUaucacCG- -5'
3520 5' -46.6 NC_001623.1 + 115361 0.71 0.984009
Target:  5'- uGCCAACGACGACGACgaAGCGUAc---- -3'
miRNA:   3'- -UGGUUGUUGUUGUUG--UCGUAUcaccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.