miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3524 5' -61 NC_001623.1 + 78404 0.66 0.698573
Target:  5'- uCGCC-GCCGCcuucuccuAUuccuccaacaccuaCACCUUCGCCGCCg -3'
miRNA:   3'- -GCGGuUGGCG--------UG--------------GUGGAGGUGGCGGg -5'
3524 5' -61 NC_001623.1 + 106595 0.66 0.69174
Target:  5'- -aCCGACgGCgGCCAUCUggCACCGCUCg -3'
miRNA:   3'- gcGGUUGgCG-UGGUGGAg-GUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 6131 0.66 0.690763
Target:  5'- cCGCCAuuaguagauuuGCCGUcugaaauguuaccACCGCCUgcaCCAUCGCUUu -3'
miRNA:   3'- -GCGGU-----------UGGCG-------------UGGUGGA---GGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 31058 0.66 0.682922
Target:  5'- uGCCcgUCGCGCgUACCggagcgcgaacgcgcCCGCCGCCg -3'
miRNA:   3'- gCGGuuGGCGUG-GUGGa--------------GGUGGCGGg -5'
3524 5' -61 NC_001623.1 + 89625 0.66 0.681941
Target:  5'- aGCCcGCCGCaaucGCCGCCgcggguaacaUCCAgCGaCCUg -3'
miRNA:   3'- gCGGuUGGCG----UGGUGG----------AGGUgGC-GGG- -5'
3524 5' -61 NC_001623.1 + 61499 0.66 0.681941
Target:  5'- gGCUAAgCGUuaaACCUUCggcGCCGCCCg -3'
miRNA:   3'- gCGGUUgGCGuggUGGAGG---UGGCGGG- -5'
3524 5' -61 NC_001623.1 + 132024 0.66 0.672102
Target:  5'- aGCCGucGCCGCAUCAacuuuacaacaUCUCCcGaaGCCCa -3'
miRNA:   3'- gCGGU--UGGCGUGGU-----------GGAGG-UggCGGG- -5'
3524 5' -61 NC_001623.1 + 55621 0.66 0.671116
Target:  5'- cCGCCGuauCCGUuuucgacACCGCCgCCaacacaGCCGCCa -3'
miRNA:   3'- -GCGGUu--GGCG-------UGGUGGaGG------UGGCGGg -5'
3524 5' -61 NC_001623.1 + 90686 0.67 0.642435
Target:  5'- uCGCCGuACgGCAUCGCUUUCagGCUGCaCCa -3'
miRNA:   3'- -GCGGU-UGgCGUGGUGGAGG--UGGCG-GG- -5'
3524 5' -61 NC_001623.1 + 38064 0.67 0.642435
Target:  5'- gCGCCGAUuccaaaUGCGCCGCg-CCAUgGUCCa -3'
miRNA:   3'- -GCGGUUG------GCGUGGUGgaGGUGgCGGG- -5'
3524 5' -61 NC_001623.1 + 35764 0.67 0.642435
Target:  5'- gGCCcGCU-CGCUACCUCCGCUGUa- -3'
miRNA:   3'- gCGGuUGGcGUGGUGGAGGUGGCGgg -5'
3524 5' -61 NC_001623.1 + 6267 0.67 0.636487
Target:  5'- uGCCGACUGUguuGCCuaaagagacauuugaGCCUaaaCCGCCGUCUg -3'
miRNA:   3'- gCGGUUGGCG---UGG---------------UGGA---GGUGGCGGG- -5'
3524 5' -61 NC_001623.1 + 120588 0.67 0.63252
Target:  5'- gCGCCuuCaCGCAUgGCCgCCGCCcuGUCCa -3'
miRNA:   3'- -GCGGuuG-GCGUGgUGGaGGUGG--CGGG- -5'
3524 5' -61 NC_001623.1 + 113119 0.67 0.63252
Target:  5'- -cUCGACaCGCAUCugCUCCACgGUCg -3'
miRNA:   3'- gcGGUUG-GCGUGGugGAGGUGgCGGg -5'
3524 5' -61 NC_001623.1 + 37838 0.67 0.622606
Target:  5'- aCGCC--UgGCACCACaaCUCCcucgggACUGCCCa -3'
miRNA:   3'- -GCGGuuGgCGUGGUG--GAGG------UGGCGGG- -5'
3524 5' -61 NC_001623.1 + 37182 0.67 0.612698
Target:  5'- cCGCC-GCCGCACCAa---CAagCGCCCu -3'
miRNA:   3'- -GCGGuUGGCGUGGUggagGUg-GCGGG- -5'
3524 5' -61 NC_001623.1 + 92666 0.67 0.612698
Target:  5'- uGCaggacaGACUGCACCACgUgCCagaACCGCCg -3'
miRNA:   3'- gCGg-----UUGGCGUGGUGgA-GG---UGGCGGg -5'
3524 5' -61 NC_001623.1 + 75921 0.67 0.602803
Target:  5'- uCGCCA---GCACCGCCUCgAagCGCUCg -3'
miRNA:   3'- -GCGGUuggCGUGGUGGAGgUg-GCGGG- -5'
3524 5' -61 NC_001623.1 + 15259 0.68 0.587018
Target:  5'- uGUC-ACgGCugCGCCUCCaguuaacacgaauaaACCGCCg -3'
miRNA:   3'- gCGGuUGgCGugGUGGAGG---------------UGGCGGg -5'
3524 5' -61 NC_001623.1 + 131764 0.68 0.583083
Target:  5'- uCGCUGACaCGCugCuCCUgaCGCCGCUCc -3'
miRNA:   3'- -GCGGUUG-GCGugGuGGAg-GUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.