miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
355 5' -61.3 AC_000011.1 + 15469 0.68 0.216992
Target:  5'- cCCAGGGCCUugUagaCGUaggggcagGUGCGGCGUCu -3'
miRNA:   3'- uGGUCUUGGAugG---GCG--------CGCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 10249 0.67 0.259774
Target:  5'- uGCUcgAGGACCU---CGCGCcCGGCGCCc -3'
miRNA:   3'- -UGG--UCUUGGAuggGCGCGcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 16402 0.67 0.273201
Target:  5'- uGCCGGAGCgCU-CgCCGgGCGUgaagaccacgguGGUGCCg -3'
miRNA:   3'- -UGGUCUUG-GAuG-GGCgCGCG------------CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 18174 0.66 0.321448
Target:  5'- uUCAGAguGCuCUGCCaguucgcaugaggGCGgGCGGUGCCc -3'
miRNA:   3'- uGGUCU--UG-GAUGGg------------CGCgCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 4039 0.69 0.211397
Target:  5'- uCCAGGGCCUA-CCGCGCGCGa---- -3'
miRNA:   3'- uGGUCUUGGAUgGGCGCGCGCcgcgg -5'
355 5' -61.3 AC_000011.1 + 5360 0.69 0.185258
Target:  5'- uGCU---ACCUGgCCGaCGCGCagGGCGCCg -3'
miRNA:   3'- -UGGucuUGGAUgGGC-GCGCG--CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 11395 0.69 0.185258
Target:  5'- cCCAGGgucACCUcCUCGCGCGCGaucaggguGCGCa -3'
miRNA:   3'- uGGUCU---UGGAuGGGCGCGCGC--------CGCGg -5'
355 5' -61.3 AC_000011.1 + 21383 0.7 0.153472
Target:  5'- uACgAGGGCCUGCUgCGC-CGCaGCGCCc -3'
miRNA:   3'- -UGgUCUUGGAUGG-GCGcGCGcCGCGG- -5'
355 5' -61.3 AC_000011.1 + 15503 0.66 0.332468
Target:  5'- cACCgguuGGGGCCUGCgCGCGCccaGCaagauguacggaGGCGCUc -3'
miRNA:   3'- -UGG----UCUUGGAUGgGCGCG---CG------------CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 11014 0.7 0.15769
Target:  5'- cGCCGGAGCggcACCCGCGCGUgcagaugaaaagGGaCGCUc -3'
miRNA:   3'- -UGGUCUUGga-UGGGCGCGCG------------CC-GCGG- -5'
355 5' -61.3 AC_000011.1 + 16009 0.7 0.175625
Target:  5'- cACCGGugugcGCgUGCCCGUGCGCaccCGCCc -3'
miRNA:   3'- -UGGUCu----UGgAUGGGCGCGCGcc-GCGG- -5'
355 5' -61.3 AC_000011.1 + 24248 0.69 0.180385
Target:  5'- gACCAGGugCUcauCaaGCGCGCGuCGCCc -3'
miRNA:   3'- -UGGUCUugGAu--GggCGCGCGCcGCGG- -5'
355 5' -61.3 AC_000011.1 + 13353 0.69 0.195353
Target:  5'- gGCCgcgaGGGugCUG-CCGCG-GCGGUGCCc -3'
miRNA:   3'- -UGG----UCUugGAUgGGCGCgCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 15902 0.69 0.195353
Target:  5'- cGCCAGcGCCggcaggACCCGgagaCGCGCGGCcacgGCg -3'
miRNA:   3'- -UGGUCuUGGa-----UGGGC----GCGCGCCG----CGg -5'
355 5' -61.3 AC_000011.1 + 17080 0.69 0.195353
Target:  5'- cACCucuGAcCCUG-CCGCGCGC-GCGCUa -3'
miRNA:   3'- -UGGu--CUuGGAUgGGCGCGCGcCGCGG- -5'
355 5' -61.3 AC_000011.1 + 30918 0.67 0.280121
Target:  5'- cCCAGuACCgcgACCagcgaGgGCGCGGCuGCUc -3'
miRNA:   3'- uGGUCuUGGa--UGGg----CgCGCGCCG-CGG- -5'
355 5' -61.3 AC_000011.1 + 12639 0.66 0.300974
Target:  5'- -gCAGGGCCUguggggcgugcagGCCCcggucggggaccGCGCGaCGGUGUCg -3'
miRNA:   3'- ugGUCUUGGA-------------UGGG------------CGCGC-GCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 23792 0.66 0.301714
Target:  5'- cGCCuacgaguuGAACCUcuucuCgCCGCGCGUGccccccaaGCGCCa -3'
miRNA:   3'- -UGGu-------CUUGGAu----G-GGCGCGCGC--------CGCGG- -5'
355 5' -61.3 AC_000011.1 + 3688 0.66 0.309192
Target:  5'- uGCC---GCCaGCgCCGUGCGCGGaaugGCCa -3'
miRNA:   3'- -UGGucuUGGaUG-GGCGCGCGCCg---CGG- -5'
355 5' -61.3 AC_000011.1 + 28399 0.66 0.324568
Target:  5'- uCCAucGCUUacaGCCUGUGCaCGGCGCUa -3'
miRNA:   3'- uGGUcuUGGA---UGGGCGCGcGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.