miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
355 5' -61.3 AC_000011.1 + 8589 0.99 0.00092
Target:  5'- uACCAGAACCUA-CCGCGCGCGGCGCCg -3'
miRNA:   3'- -UGGUCUUGGAUgGGCGCGCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 9495 0.67 0.253264
Target:  5'- aACgGGGACCccCCCGgccaccuggagaUGCGCGGCGgCg -3'
miRNA:   3'- -UGgUCUUGGauGGGC------------GCGCGCCGCgG- -5'
355 5' -61.3 AC_000011.1 + 8536 0.67 0.259774
Target:  5'- gGCCccGAGCCgccccugccGCCCgGCGCGCGuccuCGCCg -3'
miRNA:   3'- -UGGu-CUUGGa--------UGGG-CGCGCGCc---GCGG- -5'
355 5' -61.3 AC_000011.1 + 13707 0.66 0.324568
Target:  5'- uGCCuGucguGCC-ACCgGCGUuuacggGCGGCGCUg -3'
miRNA:   3'- -UGGuCu---UGGaUGGgCGCG------CGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 11297 0.76 0.057532
Target:  5'- gACCAGGuugGCCgcgGCCaCGUGCGCGcGCGCg -3'
miRNA:   3'- -UGGUCU---UGGa--UGG-GCGCGCGC-CGCGg -5'
355 5' -61.3 AC_000011.1 + 24677 0.71 0.141427
Target:  5'- cGCCGG-GCCUcCCCGCGCaggGUGGUGUg -3'
miRNA:   3'- -UGGUCuUGGAuGGGCGCG---CGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 5210 0.7 0.162012
Target:  5'- gACCGGAcCCUGgCUGCGC-UGGaCGCCc -3'
miRNA:   3'- -UGGUCUuGGAUgGGCGCGcGCC-GCGG- -5'
355 5' -61.3 AC_000011.1 + 3763 0.7 0.162012
Target:  5'- aGCCGGcGCCcauggccauUCCGCGCaCGGCGCUg -3'
miRNA:   3'- -UGGUCuUGGau-------GGGCGCGcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 5360 0.69 0.185258
Target:  5'- uGCU---ACCUGgCCGaCGCGCagGGCGCCg -3'
miRNA:   3'- -UGGucuUGGAUgGGC-GCGCG--CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 21911 0.68 0.241267
Target:  5'- uACCAGuuccgcaacgugucCCUGCCCGCGgGCcaUGCCg -3'
miRNA:   3'- -UGGUCuu------------GGAUGGGCGCgCGccGCGG- -5'
355 5' -61.3 AC_000011.1 + 15469 0.68 0.216992
Target:  5'- cCCAGGGCCUugUagaCGUaggggcagGUGCGGCGUCu -3'
miRNA:   3'- uGGUCUUGGAugG---GCG--------CGCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 11395 0.69 0.185258
Target:  5'- cCCAGGgucACCUcCUCGCGCGCGaucaggguGCGCa -3'
miRNA:   3'- uGGUCU---UGGAuGGGCGCGCGC--------CGCGg -5'
355 5' -61.3 AC_000011.1 + 12276 0.78 0.038427
Target:  5'- gGCCAGGACCUuCUCGUGCGUGGgGUUg -3'
miRNA:   3'- -UGGUCUUGGAuGGGCGCGCGCCgCGG- -5'
355 5' -61.3 AC_000011.1 + 22483 0.68 0.240648
Target:  5'- cCCAGAACC-GCUgggggCGCaGCGUGGUGCa -3'
miRNA:   3'- uGGUCUUGGaUGG-----GCG-CGCGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 15959 0.77 0.047043
Target:  5'- uCCGGGuCCUGCCgGCGC-UGGCGCCu -3'
miRNA:   3'- uGGUCUuGGAUGGgCGCGcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 15813 0.7 0.170978
Target:  5'- cGCCGGcucuuggcgcgGGCgUACCgGCGCGCGucCGCCa -3'
miRNA:   3'- -UGGUC-----------UUGgAUGGgCGCGCGCc-GCGG- -5'
355 5' -61.3 AC_000011.1 + 8211 0.68 0.240648
Target:  5'- cGCCGaggucuGGACCUGCCuCcCGCGCGG-GCUc -3'
miRNA:   3'- -UGGU------CUUGGAUGG-GcGCGCGCCgCGG- -5'
355 5' -61.3 AC_000011.1 + 10249 0.67 0.259774
Target:  5'- uGCUcgAGGACCU---CGCGCcCGGCGCCc -3'
miRNA:   3'- -UGG--UCUUGGAuggGCGCGcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 16624 0.77 0.051288
Target:  5'- cGCUuGAACC--CCCG-GCGCGGCGCCg -3'
miRNA:   3'- -UGGuCUUGGauGGGCgCGCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 16353 0.7 0.153472
Target:  5'- cACCGGuugcACCUuccGCCCGCGCcacuGCacGCGCCg -3'
miRNA:   3'- -UGGUCu---UGGA---UGGGCGCG----CGc-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.