miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
357 3' -56.1 AC_000011.1 + 24749 0.66 0.556617
Target:  5'- uGCUGCCACaCGC-CCAUGCcCGucugccAGGu- -3'
miRNA:   3'- -CGAUGGUG-GCGuGGUACGaGC------UCCug -5'
357 3' -56.1 AC_000011.1 + 11961 0.66 0.555508
Target:  5'- cCUGCCGCCGCcuccaagGCCcgGCggcuGGGCu -3'
miRNA:   3'- cGAUGGUGGCG-------UGGuaCGagcuCCUG- -5'
357 3' -56.1 AC_000011.1 + 22799 0.66 0.538946
Target:  5'- -gUACCGCCGCAUC-UGCcaccuguacaucaaCGAGGAg -3'
miRNA:   3'- cgAUGGUGGCGUGGuACGa-------------GCUCCUg -5'
357 3' -56.1 AC_000011.1 + 10165 0.66 0.523644
Target:  5'- aGCgGCCAUCGCuCgGUGg-CGGGGGCg -3'
miRNA:   3'- -CGaUGGUGGCGuGgUACgaGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 13991 0.66 0.516055
Target:  5'- gGCUgcaucGCCGCCGcCGCCAUcgccugcugcaucacGCUCucguacgagggagGAGGACc -3'
miRNA:   3'- -CGA-----UGGUGGC-GUGGUA---------------CGAG-------------CUCCUG- -5'
357 3' -56.1 AC_000011.1 + 31680 0.66 0.512816
Target:  5'- uCUGgCGCUGCugCAggaGCUCGuAGGAg -3'
miRNA:   3'- cGAUgGUGGCGugGUa--CGAGC-UCCUg -5'
357 3' -56.1 AC_000011.1 + 15671 0.67 0.502081
Target:  5'- uGC-GCgACCGCACgCGgccCUUGAGGGCg -3'
miRNA:   3'- -CGaUGgUGGCGUG-GUac-GAGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 24435 0.67 0.480916
Target:  5'- aGUUugCGCCGCucuuCCAaaCUCuGGGGACu -3'
miRNA:   3'- -CGAugGUGGCGu---GGUacGAG-CUCCUG- -5'
357 3' -56.1 AC_000011.1 + 4877 0.67 0.480916
Target:  5'- aCUACCACCuGCAgCcgGUcaUCGGGGuCa -3'
miRNA:   3'- cGAUGGUGG-CGUgGuaCG--AGCUCCuG- -5'
357 3' -56.1 AC_000011.1 + 25046 0.67 0.470497
Target:  5'- cCUACCACuCGgA-CGUGaUCGAGGACg -3'
miRNA:   3'- cGAUGGUG-GCgUgGUACgAGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 13417 0.68 0.443963
Target:  5'- gGC-ACCGCCGCggcagcacccucgcgGCCGgacagcGC-CGAGGACg -3'
miRNA:   3'- -CGaUGGUGGCG---------------UGGUa-----CGaGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 22629 0.68 0.430027
Target:  5'- gGCUGCacgGgUGCACCGagGC-CGAGGGCa -3'
miRNA:   3'- -CGAUGg--UgGCGUGGUa-CGaGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 13364 0.68 0.430027
Target:  5'- uGCUGCCGCgGCG--GUGCcCGAGGcCg -3'
miRNA:   3'- -CGAUGGUGgCGUggUACGaGCUCCuG- -5'
357 3' -56.1 AC_000011.1 + 21393 0.68 0.430027
Target:  5'- uGCUgcGCCGCaGCGCCcugGCcacCGAGGACc -3'
miRNA:   3'- -CGA--UGGUGgCGUGGua-CGa--GCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 999 0.68 0.420233
Target:  5'- cCUGCUcguCCuCAUCAUcGCUCGGGGGCa -3'
miRNA:   3'- cGAUGGu--GGcGUGGUA-CGAGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 27147 0.68 0.401055
Target:  5'- aCUGCCGCCGCuuCCGcUGCuUCGcucGGGAUc -3'
miRNA:   3'- cGAUGGUGGCGu-GGU-ACG-AGC---UCCUG- -5'
357 3' -56.1 AC_000011.1 + 23743 0.68 0.401055
Target:  5'- cGCUGCUcgACCGCACCGaggUGCcccucagcgUgGAGGAg -3'
miRNA:   3'- -CGAUGG--UGGCGUGGU---ACG---------AgCUCCUg -5'
357 3' -56.1 AC_000011.1 + 18484 0.68 0.401055
Target:  5'- gGCUGaCGCUGCGCUucGUGCccguggaccgCGAGGACa -3'
miRNA:   3'- -CGAUgGUGGCGUGG--UACGa---------GCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 20566 0.68 0.391677
Target:  5'- gGCUACCAggGCuucuaCGUGCcCGAGGGCu -3'
miRNA:   3'- -CGAUGGUggCGug---GUACGaGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 6702 0.69 0.382444
Target:  5'- cGCUGCUACCcCACCuacaucgGCauccUCGAGGAg -3'
miRNA:   3'- -CGAUGGUGGcGUGGua-----CG----AGCUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.