Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
357 | 5' | -64.5 | AC_000011.1 | + | 13974 | 0.66 | 0.235875 |
Target: 5'- cGUGCCCCCGCggUACCuGGCGccuacggaggGGCgGa -3' miRNA: 3'- -CGCGGGGGCG--GUGGcUCGCua--------CCGgC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 23266 | 0.66 | 0.235875 |
Target: 5'- cUGCCCCCGaagagacauacCUACCGccGCG-UGGCCu -3' miRNA: 3'- cGCGGGGGC-----------GGUGGCu-CGCuACCGGc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 24989 | 0.66 | 0.224269 |
Target: 5'- aGUGCCCCCcgccgcuguggaGCCACUGcuaccugcuGCGccUGGCCa -3' miRNA: 3'- -CGCGGGGG------------CGGUGGCu--------CGCu-ACCGGc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 15757 | 0.66 | 0.218651 |
Target: 5'- aCGCCCgCGCCaagaGCCG-GCGgcGGCg- -3' miRNA: 3'- cGCGGGgGCGG----UGGCuCGCuaCCGgc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 11477 | 0.66 | 0.218651 |
Target: 5'- gGCGCUgCUGaauauCACCGAGCccGAgGGCCGc -3' miRNA: 3'- -CGCGGgGGCg----GUGGCUCG--CUaCCGGC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 13183 | 0.66 | 0.218651 |
Target: 5'- -gGCUCCCGCCGCCGggguucuacacgGGCGA-GuaCGa -3' miRNA: 3'- cgCGGGGGCGGUGGC------------UCGCUaCcgGC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 15804 | 0.66 | 0.215337 |
Target: 5'- aGCaCCCCCGCCAUgcgcgCGGcGCGAgccuugcugcgcagGGCCa -3' miRNA: 3'- -CGcGGGGGCGGUG-----GCU-CGCUa-------------CCGGc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 12511 | 0.66 | 0.215337 |
Target: 5'- aGCGCCCUgCGCCugauggugACCGAggugccccagaGCGAgguguaccaguccgGGCCGg -3' miRNA: 3'- -CGCGGGG-GCGG--------UGGCU-----------CGCUa-------------CCGGC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 33965 | 0.66 | 0.213153 |
Target: 5'- uGCGCCCgCCGCaccagacgACUGAuGCuGAgGGCCGu -3' miRNA: 3'- -CGCGGG-GGCGg-------UGGCU-CG-CUaCCGGC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 12092 | 0.66 | 0.207774 |
Target: 5'- aGCGCCgCCCGCaucgCGGGaucaggaGGUGGCUGu -3' miRNA: 3'- -CGCGG-GGGCGgug-GCUCg------CUACCGGC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 17863 | 0.66 | 0.202513 |
Target: 5'- aGCGaCCCCGCC-CCGAuGCGGaGGagaCGc -3' miRNA: 3'- -CGCgGGGGCGGuGGCU-CGCUaCCg--GC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 16338 | 0.66 | 0.202513 |
Target: 5'- cCGCCCgCGCCACUGcacGCGcc-GCCGg -3' miRNA: 3'- cGCGGGgGCGGUGGCu--CGCuacCGGC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 18139 | 0.67 | 0.197368 |
Target: 5'- gGUGCCCCCGgg-UCGcGCGcgGGCCa -3' miRNA: 3'- -CGCGGGGGCgguGGCuCGCuaCCGGc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 25109 | 0.67 | 0.187419 |
Target: 5'- aCGUCCUCGaucaCGuCCGAGUGGUaGGCCa -3' miRNA: 3'- cGCGGGGGCg---GU-GGCUCGCUA-CCGGc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 6396 | 0.67 | 0.182612 |
Target: 5'- -aGCCCCUGCgCGgCGAG--GUGGCCa -3' miRNA: 3'- cgCGGGGGCG-GUgGCUCgcUACCGGc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 20837 | 0.67 | 0.177915 |
Target: 5'- gGCGCUCuuGCCGauGAGCGGguagggguaguUGGCgGg -3' miRNA: 3'- -CGCGGGggCGGUggCUCGCU-----------ACCGgC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 9363 | 0.67 | 0.173325 |
Target: 5'- cUGCCCgugCGCCGCCG-GCGAcgcaGGCCc -3' miRNA: 3'- cGCGGGg--GCGGUGGCuCGCUa---CCGGc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 19906 | 0.67 | 0.173325 |
Target: 5'- aGCGCagCCCCGCaUugCG-GUGGUGGuuGa -3' miRNA: 3'- -CGCG--GGGGCG-GugGCuCGCUACCggC- -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 12326 | 0.68 | 0.168841 |
Target: 5'- cCGgCCUCGUCGCCGcG-GAUGGCCu -3' miRNA: 3'- cGCgGGGGCGGUGGCuCgCUACCGGc -5' |
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357 | 5' | -64.5 | AC_000011.1 | + | 25949 | 0.68 | 0.147948 |
Target: 5'- uUGCCCCCGCagGCCugcaagcagGAGaCGAUGGCg- -3' miRNA: 3'- cGCGGGGGCGg-UGG---------CUC-GCUACCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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