miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3574 5' -56.9 NC_001650.1 + 121485 0.66 0.911443
Target:  5'- aCGAGugccUGcGCCGCUGCAGcCCCACc-- -3'
miRNA:   3'- -GUUCu---AC-CGGCGGUGUCaGGGUGcac -5'
3574 5' -56.9 NC_001650.1 + 117241 0.66 0.911443
Target:  5'- gCAGGgcGGCgGCCA-GGUCCC-CGUu -3'
miRNA:   3'- -GUUCuaCCGgCGGUgUCAGGGuGCAc -5'
3574 5' -56.9 NC_001650.1 + 78616 0.66 0.905442
Target:  5'- gCGGGc--GCCGCUGCGGcagacuagCCCACGUGg -3'
miRNA:   3'- -GUUCuacCGGCGGUGUCa-------GGGUGCAC- -5'
3574 5' -56.9 NC_001650.1 + 86836 0.66 0.905442
Target:  5'- aCAGGcgGGUgaaGCUGCAGUCCC-CGa- -3'
miRNA:   3'- -GUUCuaCCGg--CGGUGUCAGGGuGCac -5'
3574 5' -56.9 NC_001650.1 + 70927 0.66 0.899213
Target:  5'- aCAccGUGGCCGCCAUgucagagagcauGGUCaUCACGUa -3'
miRNA:   3'- -GUucUACCGGCGGUG------------UCAG-GGUGCAc -5'
3574 5' -56.9 NC_001650.1 + 118095 0.66 0.899213
Target:  5'- cCGAGGUGG-UGCaGCAGcCCCACGa- -3'
miRNA:   3'- -GUUCUACCgGCGgUGUCaGGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 134367 0.66 0.899213
Target:  5'- gGGGAgGGCCGcCCGCGGUcgcccCCUugGUc -3'
miRNA:   3'- gUUCUaCCGGC-GGUGUCA-----GGGugCAc -5'
3574 5' -56.9 NC_001650.1 + 155051 0.66 0.892759
Target:  5'- cCGAGG-GGUCGCagaGCAGgCCCAgGUGc -3'
miRNA:   3'- -GUUCUaCCGGCGg--UGUCaGGGUgCAC- -5'
3574 5' -56.9 NC_001650.1 + 72194 0.66 0.892759
Target:  5'- gGAGAcGGCCGCC-CcG-CCCAgGUGc -3'
miRNA:   3'- gUUCUaCCGGCGGuGuCaGGGUgCAC- -5'
3574 5' -56.9 NC_001650.1 + 26633 0.66 0.87919
Target:  5'- aCAAGAagcUGGaCCcgGCCACGGUCUCG-GUGa -3'
miRNA:   3'- -GUUCU---ACC-GG--CGGUGUCAGGGUgCAC- -5'
3574 5' -56.9 NC_001650.1 + 128524 0.66 0.87919
Target:  5'- --uGAUGGCgGCCgcGCAGcagCUCACGUa -3'
miRNA:   3'- guuCUACCGgCGG--UGUCa--GGGUGCAc -5'
3574 5' -56.9 NC_001650.1 + 156408 0.66 0.87919
Target:  5'- gGAGAUGGCCcugGCCggGCAGUgCgGgGUGa -3'
miRNA:   3'- gUUCUACCGG---CGG--UGUCAgGgUgCAC- -5'
3574 5' -56.9 NC_001650.1 + 24088 0.67 0.872082
Target:  5'- cCGAGAUGGCCaugGCgGggaugaGGUCCCuggACGUGg -3'
miRNA:   3'- -GUUCUACCGG---CGgUg-----UCAGGG---UGCAC- -5'
3574 5' -56.9 NC_001650.1 + 77129 0.67 0.872082
Target:  5'- -uGGGUGGUCGCgGCGG-CCC-CGUc -3'
miRNA:   3'- guUCUACCGGCGgUGUCaGGGuGCAc -5'
3574 5' -56.9 NC_001650.1 + 5465 0.67 0.872082
Target:  5'- cCAAGAUGGCCGCCugcCAGg--CAUGg- -3'
miRNA:   3'- -GUUCUACCGGCGGu--GUCaggGUGCac -5'
3574 5' -56.9 NC_001650.1 + 172172 0.67 0.872082
Target:  5'- cCAAGAUGGCCGCCugcCAGg--CAUGg- -3'
miRNA:   3'- -GUUCUACCGGCGGu--GUCaggGUGCac -5'
3574 5' -56.9 NC_001650.1 + 137048 0.67 0.872082
Target:  5'- -----aGGCC-CUGCAGUUCCugGUGg -3'
miRNA:   3'- guucuaCCGGcGGUGUCAGGGugCAC- -5'
3574 5' -56.9 NC_001650.1 + 107227 0.67 0.869909
Target:  5'- gGAGAagcUGGCCGCCGCccucaagauggacgGGU-CCACGg- -3'
miRNA:   3'- gUUCU---ACCGGCGGUG--------------UCAgGGUGCac -5'
3574 5' -56.9 NC_001650.1 + 102408 0.67 0.864766
Target:  5'- gGGGAgcggGGCCGCCAUcuacgaccuGUCCCAgcugcagcCGUGc -3'
miRNA:   3'- gUUCUa---CCGGCGGUGu--------CAGGGU--------GCAC- -5'
3574 5' -56.9 NC_001650.1 + 129078 0.67 0.849529
Target:  5'- cCAGGcuggacGUGGCCGCgACGGgcucgcUCCCGCGc- -3'
miRNA:   3'- -GUUC------UACCGGCGgUGUC------AGGGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.