miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 3' -46.9 NC_001650.1 + 27874 0.66 0.999976
Target:  5'- uGGcGCGCCAgCaUCUGGggcgAGAAGGAGg -3'
miRNA:   3'- -CC-CGCGGUgG-GGAUCaua-UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 50754 0.66 0.999976
Target:  5'- uGGGCGCCGCCaCCa------------- -3'
miRNA:   3'- -CCCGCGGUGG-GGaucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 73783 0.66 0.999976
Target:  5'- aGGCcCUGCCCCUGGggcUGuuGGAGGa -3'
miRNA:   3'- cCCGcGGUGGGGAUCau-AUuuUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 134955 0.66 0.999976
Target:  5'- gGGGCGCCGCCuCCa------------- -3'
miRNA:   3'- -CCCGCGGUGG-GGaucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 121081 0.66 0.999976
Target:  5'- -cGCGCCGCCCCcAGcgccgccgcGUAGGAGAGc -3'
miRNA:   3'- ccCGCGGUGGGGaUCa--------UAUUUUUUUc -5'
3575 3' -46.9 NC_001650.1 + 52859 0.66 0.999968
Target:  5'- gGGcGCGCCuCCUCUcGUAgcAGGAGGGc -3'
miRNA:   3'- -CC-CGCGGuGGGGAuCAUauUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 47831 0.66 0.999968
Target:  5'- aGGGcCGCCGCCCUcuuUGGgaccAUGcuuGAGGGGg -3'
miRNA:   3'- -CCC-GCGGUGGGG---AUCa---UAUu--UUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 14113 0.66 0.999968
Target:  5'- gGGGCGCCucuCUCCgggGGaagccUGUAAGGAuGGg -3'
miRNA:   3'- -CCCGCGGu--GGGGa--UC-----AUAUUUUUuUC- -5'
3575 3' -46.9 NC_001650.1 + 180820 0.66 0.999968
Target:  5'- gGGGCGCCucuCUCCgggGGaagccUGUAAGGAuGGg -3'
miRNA:   3'- -CCCGCGGu--GGGGa--UC-----AUAUUUUUuUC- -5'
3575 3' -46.9 NC_001650.1 + 40581 0.66 0.999957
Target:  5'- -cGCGCC-CCCCUcgugGGUGUuuGGGAAc -3'
miRNA:   3'- ccCGCGGuGGGGA----UCAUAuuUUUUUc -5'
3575 3' -46.9 NC_001650.1 + 131537 0.66 0.999957
Target:  5'- cGGGC-CCACCCgCgGGUGcgucucggGGAGGAAGa -3'
miRNA:   3'- -CCCGcGGUGGG-GaUCAUa-------UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 69909 0.66 0.999957
Target:  5'- gGGGCcuGCUgguACCCCgUGGUggucgagaAUGAAGAGGGg -3'
miRNA:   3'- -CCCG--CGG---UGGGG-AUCA--------UAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 132440 0.66 0.999957
Target:  5'- aGGCagGCCGCCUggCUGGgggAGAGGAAGa -3'
miRNA:   3'- cCCG--CGGUGGG--GAUCauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 117124 0.66 0.999957
Target:  5'- gGGGCagcuuggagacGUCGCCCCcgUGGUAcuuUAGGAGGGGc -3'
miRNA:   3'- -CCCG-----------CGGUGGGG--AUCAU---AUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 179007 0.66 0.999957
Target:  5'- uGGgGCCAuCCuCCUuccUAUAAGAAAAGa -3'
miRNA:   3'- cCCgCGGU-GG-GGAuc-AUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 12300 0.66 0.999957
Target:  5'- uGGgGCCAuCCuCCUuccUAUAAGAAAAGa -3'
miRNA:   3'- cCCgCGGU-GG-GGAuc-AUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 183591 0.66 0.999953
Target:  5'- gGGGUcaGCCAuauugguagggagcCCCCUGuGcAUGAGAGAGGg -3'
miRNA:   3'- -CCCG--CGGU--------------GGGGAU-CaUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 16884 0.66 0.999953
Target:  5'- gGGGUcaGCCAuauugguagggagcCCCCUGuGcAUGAGAGAGGg -3'
miRNA:   3'- -CCCG--CGGU--------------GGGGAU-CaUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 44712 0.66 0.999948
Target:  5'- uGGaGCGCUGcagggucuguaaaucCCCCUGGUGUGAu----- -3'
miRNA:   3'- -CC-CGCGGU---------------GGGGAUCAUAUUuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 88528 0.66 0.999942
Target:  5'- gGGGCGCCGgUCuCUGG----AAAAGAGa -3'
miRNA:   3'- -CCCGCGGUgGG-GAUCauauUUUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.