miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 3' -46.9 NC_001650.1 + 132440 0.66 0.999957
Target:  5'- aGGCagGCCGCCUggCUGGgggAGAGGAAGa -3'
miRNA:   3'- cCCG--CGGUGGG--GAUCauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 131537 0.66 0.999957
Target:  5'- cGGGC-CCACCCgCgGGUGcgucucggGGAGGAAGa -3'
miRNA:   3'- -CCCGcGGUGGG-GaUCAUa-------UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 131185 0.68 0.999553
Target:  5'- gGGGCGCCGCCUCgaagacGGgccucuGGGAGu -3'
miRNA:   3'- -CCCGCGGUGGGGa-----UCauauuuUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 127335 0.72 0.989259
Target:  5'- gGGGC-CCGguggucuCCCCU-GUGUGGGAAAAGg -3'
miRNA:   3'- -CCCGcGGU-------GGGGAuCAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 127066 0.75 0.941746
Target:  5'- gGGGCGCCggGCCCggggucuccaCUAGUGaAAAAGAAGc -3'
miRNA:   3'- -CCCGCGG--UGGG----------GAUCAUaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 124694 0.67 0.999899
Target:  5'- gGGGUGCaaGCCUC-GGUGUAGAAAGu- -3'
miRNA:   3'- -CCCGCGg-UGGGGaUCAUAUUUUUUuc -5'
3575 3' -46.9 NC_001650.1 + 124573 0.67 0.999868
Target:  5'- uGGGCGCgACCCCcGGcgAUAc------ -3'
miRNA:   3'- -CCCGCGgUGGGGaUCa-UAUuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 124346 0.66 0.999923
Target:  5'- cGGGCGCgACCCCcg----AAAGAAc- -3'
miRNA:   3'- -CCCGCGgUGGGGaucauaUUUUUUuc -5'
3575 3' -46.9 NC_001650.1 + 123915 0.67 0.99982
Target:  5'- gGGGCGuCCACCCCcAGcagccc-AAAGa -3'
miRNA:   3'- -CCCGC-GGUGGGGaUCauauuuuUUUC- -5'
3575 3' -46.9 NC_001650.1 + 121404 0.67 0.99978
Target:  5'- gGGGCGCCGCCUCg------------- -3'
miRNA:   3'- -CCCGCGGUGGGGaucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 121081 0.66 0.999976
Target:  5'- -cGCGCCGCCCCcAGcgccgccgcGUAGGAGAGc -3'
miRNA:   3'- ccCGCGGUGGGGaUCa--------UAUUUUUUUc -5'
3575 3' -46.9 NC_001650.1 + 117124 0.66 0.999957
Target:  5'- gGGGCagcuuggagacGUCGCCCCcgUGGUAcuuUAGGAGGGGc -3'
miRNA:   3'- -CCCG-----------CGGUGGGG--AUCAU---AUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 116286 0.69 0.999088
Target:  5'- aGGGCgGCCGCgcugcuguuuaacaCCCUGGUGccggacgAGGAGAAGc -3'
miRNA:   3'- -CCCG-CGGUG--------------GGGAUCAUa------UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 113118 0.71 0.995585
Target:  5'- -cGCGCaaaagACCCCUAGg--GAGAGGAGg -3'
miRNA:   3'- ccCGCGg----UGGGGAUCauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 111282 0.71 0.991949
Target:  5'- uGGCGCCgcuggaGCCCCUGGgGUAGGGc--- -3'
miRNA:   3'- cCCGCGG------UGGGGAUCaUAUUUUuuuc -5'
3575 3' -46.9 NC_001650.1 + 109475 0.7 0.996181
Target:  5'- gGGGCGCCccccacuaucgccACCCCgcGgg-GAAGGGGGg -3'
miRNA:   3'- -CCCGCGG-------------UGGGGauCauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 102782 0.68 0.999719
Target:  5'- cGGCGCCGgccuCCCCUcccAGcAUGAGGAAc- -3'
miRNA:   3'- cCCGCGGU----GGGGA---UCaUAUUUUUUuc -5'
3575 3' -46.9 NC_001650.1 + 94679 0.68 0.999719
Target:  5'- aGGaGCGCCGCCUC-GGUcUGGucGAGGg -3'
miRNA:   3'- -CC-CGCGGUGGGGaUCAuAUUuuUUUC- -5'
3575 3' -46.9 NC_001650.1 + 94612 0.67 0.99978
Target:  5'- uGGGCGCCGCCUCa------------- -3'
miRNA:   3'- -CCCGCGGUGGGGaucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 90184 0.66 0.999923
Target:  5'- cGGCGCUggcgcCCCCUGGcggcgGUGGGGAAGc -3'
miRNA:   3'- cCCGCGGu----GGGGAUCa----UAUUUUUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.