miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 3' -46.9 NC_001650.1 + 133100 0.68 0.999441
Target:  5'- cGGGCGCCACCgCCUc------------ -3'
miRNA:   3'- -CCCGCGGUGG-GGAucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 29953 0.69 0.999143
Target:  5'- gGGGCGCgGCCgCCUGGg---------- -3'
miRNA:   3'- -CCCGCGgUGG-GGAUCauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 178600 0.7 0.996819
Target:  5'- uGGGCGCCcCCUCUaugGGUcaaacAGAGAAAGa -3'
miRNA:   3'- -CCCGCGGuGGGGA---UCAua---UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 46723 0.71 0.995442
Target:  5'- aGGGCGCCcggucgccgccGCCCCgacgccgGGGAGAGGg -3'
miRNA:   3'- -CCCGCGG-----------UGGGGaucaua-UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 70679 0.67 0.999868
Target:  5'- aGGGCGuCCACCCCa------------- -3'
miRNA:   3'- -CCCGC-GGUGGGGaucauauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 158453 0.67 0.99978
Target:  5'- cGGcCGCCAgcCCCCUGGUGa-------- -3'
miRNA:   3'- cCC-GCGGU--GGGGAUCAUauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 57029 0.69 0.998949
Target:  5'- cGGCGUCACCCuCUGc---GAGGAAAGg -3'
miRNA:   3'- cCCGCGGUGGG-GAUcauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 111282 0.71 0.991949
Target:  5'- uGGCGCCgcuggaGCCCCUGGgGUAGGGc--- -3'
miRNA:   3'- cCCGCGG------UGGGGAUCaUAUUUUuuuc -5'
3575 3' -46.9 NC_001650.1 + 94679 0.68 0.999719
Target:  5'- aGGaGCGCCGCCUC-GGUcUGGucGAGGg -3'
miRNA:   3'- -CC-CGCGGUGGGGaUCAuAUUuuUUUC- -5'
3575 3' -46.9 NC_001650.1 + 127335 0.72 0.989259
Target:  5'- gGGGC-CCGguggucuCCCCU-GUGUGGGAAAAGg -3'
miRNA:   3'- -CCCGcGGU-------GGGGAuCAUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 116286 0.69 0.999088
Target:  5'- aGGGCgGCCGCgcugcuguuuaacaCCCUGGUGccggacgAGGAGAAGc -3'
miRNA:   3'- -CCCG-CGGUG--------------GGGAUCAUa------UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 184094 0.68 0.999553
Target:  5'- uGGGCGaCCACCUCgggGGUGg-------- -3'
miRNA:   3'- -CCCGC-GGUGGGGa--UCAUauuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 88341 0.69 0.998718
Target:  5'- aGGGCuucgguuugGCCGCUCggGGUAUAAGAAAc- -3'
miRNA:   3'- -CCCG---------CGGUGGGgaUCAUAUUUUUUuc -5'
3575 3' -46.9 NC_001650.1 + 11893 0.7 0.996819
Target:  5'- uGGGCGCCcCCUCUaugGGUcaaacAGAGAAAGa -3'
miRNA:   3'- -CCCGCGGuGGGGA---UCAua---UUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 1642 0.7 0.996243
Target:  5'- gGGGgGCCGgCCUugUGGUGUGAGGuAAGc -3'
miRNA:   3'- -CCCgCGGUgGGG--AUCAUAUUUUuUUC- -5'
3575 3' -46.9 NC_001650.1 + 109475 0.7 0.996181
Target:  5'- gGGGCGCCccccacuaucgccACCCCgcGgg-GAAGGGGGg -3'
miRNA:   3'- -CCCGCGG-------------UGGGGauCauaUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 16884 0.66 0.999953
Target:  5'- gGGGUcaGCCAuauugguagggagcCCCCUGuGcAUGAGAGAGGg -3'
miRNA:   3'- -CCCG--CGGU--------------GGGGAU-CaUAUUUUUUUC- -5'
3575 3' -46.9 NC_001650.1 + 28769 0.67 0.999899
Target:  5'- gGGGCGCCAUcaugagcgCCCUGG-AUAu------ -3'
miRNA:   3'- -CCCGCGGUG--------GGGAUCaUAUuuuuuuc -5'
3575 3' -46.9 NC_001650.1 + 123915 0.67 0.99982
Target:  5'- gGGGCGuCCACCCCcAGcagccc-AAAGa -3'
miRNA:   3'- -CCCGC-GGUGGGGaUCauauuuuUUUC- -5'
3575 3' -46.9 NC_001650.1 + 94612 0.67 0.99978
Target:  5'- uGGGCGCCGCCUCa------------- -3'
miRNA:   3'- -CCCGCGGUGGGGaucauauuuuuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.