miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3579 5' -60 NC_001650.1 + 129581 0.66 0.798366
Target:  5'- uGGGGGCCUCCGUCacgaagGCCUucCAGuCc -3'
miRNA:   3'- cUCCCUGGGGGCAGg-----CGGAuaGUCuG- -5'
3579 5' -60 NC_001650.1 + 134929 0.66 0.798366
Target:  5'- gGGGGGuccGCCUCUGcagCCGCCUcUgGGGCa -3'
miRNA:   3'- -CUCCC---UGGGGGCa--GGCGGAuAgUCUG- -5'
3579 5' -60 NC_001650.1 + 134998 0.66 0.798366
Target:  5'- gGGGGGACguCCUCGUCCgugaggucuGCCUcUgGGGCa -3'
miRNA:   3'- -CUCCCUG--GGGGCAGG---------CGGAuAgUCUG- -5'
3579 5' -60 NC_001650.1 + 26289 0.66 0.79315
Target:  5'- aGAGGGGCCCcggguucuCCGUCCGCggugugcuuGACg -3'
miRNA:   3'- -CUCCCUGGG--------GGCAGGCGgauagu---CUG- -5'
3579 5' -60 NC_001650.1 + 135894 0.66 0.789646
Target:  5'- aGGGGGGCCUCUGcCCGCCccUCccugAGAa -3'
miRNA:   3'- -CUCCCUGGGGGCaGGCGGauAG----UCUg -5'
3579 5' -60 NC_001650.1 + 146349 0.66 0.789646
Target:  5'- -cGuGGGCaCCCUGUCCGUCU-UCGGGg -3'
miRNA:   3'- cuC-CCUG-GGGGCAGGCGGAuAGUCUg -5'
3579 5' -60 NC_001650.1 + 121085 0.66 0.789646
Target:  5'- cGGGGGGCgCCCGUCCugggguuCCgggacgCGGACc -3'
miRNA:   3'- -CUCCCUGgGGGCAGGc------GGaua---GUCUG- -5'
3579 5' -60 NC_001650.1 + 155849 0.66 0.780795
Target:  5'- cAGGGACCCCgCGUCCaGCUcguUGUCc--- -3'
miRNA:   3'- cUCCCUGGGG-GCAGG-CGG---AUAGucug -5'
3579 5' -60 NC_001650.1 + 101776 0.66 0.77722
Target:  5'- cAGGGACCCCgagcccagguacaGcCCGCCUcUCAG-Ca -3'
miRNA:   3'- cUCCCUGGGGg------------CaGGCGGAuAGUCuG- -5'
3579 5' -60 NC_001650.1 + 15076 0.66 0.77182
Target:  5'- aAGGGACggCCCCGcCCGCUUccucuuuaCAGACc -3'
miRNA:   3'- cUCCCUG--GGGGCaGGCGGAua------GUCUG- -5'
3579 5' -60 NC_001650.1 + 181783 0.66 0.77182
Target:  5'- aAGGGACggCCCCGcCCGCUUccucuuuaCAGACc -3'
miRNA:   3'- cUCCCUG--GGGGCaGGCGGAua------GUCUG- -5'
3579 5' -60 NC_001650.1 + 133134 0.66 0.76273
Target:  5'- gGGGGGACCCUCGggCGgCUGUagucucgcggagCGGGCg -3'
miRNA:   3'- -CUCCCUGGGGGCagGCgGAUA------------GUCUG- -5'
3579 5' -60 NC_001650.1 + 61147 0.66 0.76273
Target:  5'- -cGGGuCCCCCG-CCGCCcc-CAuGACu -3'
miRNA:   3'- cuCCCuGGGGGCaGGCGGauaGU-CUG- -5'
3579 5' -60 NC_001650.1 + 164668 0.67 0.747965
Target:  5'- cGGGGGAccgcggcgcucaaccCCCCCGacucgcgCCGCUgcaCAGACa -3'
miRNA:   3'- -CUCCCU---------------GGGGGCa------GGCGGauaGUCUG- -5'
3579 5' -60 NC_001650.1 + 110793 0.67 0.744234
Target:  5'- uGGGGcGGCCCCUGUUCGCgUugcUgAGGCu -3'
miRNA:   3'- -CUCC-CUGGGGGCAGGCGgAu--AgUCUG- -5'
3579 5' -60 NC_001650.1 + 129351 0.67 0.744234
Target:  5'- aGAGGGccGCCCCCGuguccUCgGCCc--CGGGCg -3'
miRNA:   3'- -CUCCC--UGGGGGC-----AGgCGGauaGUCUG- -5'
3579 5' -60 NC_001650.1 + 79454 0.67 0.734846
Target:  5'- cGAGGuuCCCaUgGUcCCGCCUGUCAGGu -3'
miRNA:   3'- -CUCCcuGGG-GgCA-GGCGGAUAGUCUg -5'
3579 5' -60 NC_001650.1 + 117035 0.67 0.725375
Target:  5'- cGGGGACCUggCCG-CCGCCcugCGGAUc -3'
miRNA:   3'- cUCCCUGGG--GGCaGGCGGauaGUCUG- -5'
3579 5' -60 NC_001650.1 + 3642 0.68 0.66727
Target:  5'- aGAGGGGccgacCCCCCGUCC-CC-GUCacgGGGCg -3'
miRNA:   3'- -CUCCCU-----GGGGGCAGGcGGaUAG---UCUG- -5'
3579 5' -60 NC_001650.1 + 170349 0.68 0.66727
Target:  5'- aGAGGGGccgacCCCCCGUCC-CC-GUCacgGGGCg -3'
miRNA:   3'- -CUCCCU-----GGGGGCAGGcGGaUAG---UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.