miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3579 5' -60 NC_001650.1 + 3642 0.68 0.66727
Target:  5'- aGAGGGGccgacCCCCCGUCC-CC-GUCacgGGGCg -3'
miRNA:   3'- -CUCCCU-----GGGGGCAGGcGGaUAG---UCUG- -5'
3579 5' -60 NC_001650.1 + 141835 0.68 0.657447
Target:  5'- cGGGGGCCCCCGaggCCGaagguuUCAGAg -3'
miRNA:   3'- cUCCCUGGGGGCa--GGCggau--AGUCUg -5'
3579 5' -60 NC_001650.1 + 91835 0.68 0.657447
Target:  5'- cGAGGGACCCCCacccCCGCCcc-CAaACa -3'
miRNA:   3'- -CUCCCUGGGGGca--GGCGGauaGUcUG- -5'
3579 5' -60 NC_001650.1 + 122907 0.68 0.656464
Target:  5'- cAGGGAggccaccUCCCUGUaCCGCC--UCAGGCa -3'
miRNA:   3'- cUCCCU-------GGGGGCA-GGCGGauAGUCUG- -5'
3579 5' -60 NC_001650.1 + 47519 0.68 0.647606
Target:  5'- uGGGGGACCCCCcugagcuaUCCcuggGUCUAUguGGCg -3'
miRNA:   3'- -CUCCCUGGGGGc-------AGG----CGGAUAguCUG- -5'
3579 5' -60 NC_001650.1 + 24988 0.69 0.626911
Target:  5'- -cGGGGCCCCC-UCCccggaguGCCUGgaCAGGCu -3'
miRNA:   3'- cuCCCUGGGGGcAGG-------CGGAUa-GUCUG- -5'
3579 5' -60 NC_001650.1 + 76876 0.69 0.608199
Target:  5'- cGAGGaGGCCCCCGUgaGCUccuUCAGGa -3'
miRNA:   3'- -CUCC-CUGGGGGCAggCGGau-AGUCUg -5'
3579 5' -60 NC_001650.1 + 31668 0.69 0.598372
Target:  5'- -cGGGGCCCCUGUCC-CUg--CAGAa -3'
miRNA:   3'- cuCCCUGGGGGCAGGcGGauaGUCUg -5'
3579 5' -60 NC_001650.1 + 174702 0.69 0.598372
Target:  5'- uGAGuGACCCCCugGUCUGCCUGgcaacCAGAg -3'
miRNA:   3'- -CUCcCUGGGGG--CAGGCGGAUa----GUCUg -5'
3579 5' -60 NC_001650.1 + 7995 0.69 0.598372
Target:  5'- uGAGuGACCCCCugGUCUGCCUGgcaacCAGAg -3'
miRNA:   3'- -CUCcCUGGGGG--CAGGCGGAUa----GUCUg -5'
3579 5' -60 NC_001650.1 + 156539 0.69 0.598372
Target:  5'- uGAGGGACCCCCGUa--CUUggCAGAg -3'
miRNA:   3'- -CUCCCUGGGGGCAggcGGAuaGUCUg -5'
3579 5' -60 NC_001650.1 + 172179 0.69 0.588568
Target:  5'- uGGGGAUCCaaGauggCCGCCUGcCAGGCa -3'
miRNA:   3'- cUCCCUGGGggCa---GGCGGAUaGUCUG- -5'
3579 5' -60 NC_001650.1 + 5472 0.69 0.588568
Target:  5'- uGGGGAUCCaaGauggCCGCCUGcCAGGCa -3'
miRNA:   3'- cUCCCUGGGggCa---GGCGGAUaGUCUG- -5'
3579 5' -60 NC_001650.1 + 102856 0.7 0.578792
Target:  5'- uGAGGGGCCCCUccuccucUUCGUCUG-CAGGCu -3'
miRNA:   3'- -CUCCCUGGGGGc------AGGCGGAUaGUCUG- -5'
3579 5' -60 NC_001650.1 + 95899 0.7 0.563229
Target:  5'- aGGGGAagUCCCUGUCaucaGCCUgcucuccucggaggaGUCAGACa -3'
miRNA:   3'- cUCCCU--GGGGGCAGg---CGGA---------------UAGUCUG- -5'
3579 5' -60 NC_001650.1 + 120614 0.7 0.558387
Target:  5'- cGAGGGcACCCCCGcccCCGCCaacaaucUAUUGGAa -3'
miRNA:   3'- -CUCCC-UGGGGGCa--GGCGG-------AUAGUCUg -5'
3579 5' -60 NC_001650.1 + 158857 0.7 0.549703
Target:  5'- --uGGACCCCCGUagCCGCCUGgagGGAg -3'
miRNA:   3'- cucCCUGGGGGCA--GGCGGAUag-UCUg -5'
3579 5' -60 NC_001650.1 + 130820 0.7 0.530561
Target:  5'- --aGGACCCCCacgucGUCCGUCUcgUGGGCg -3'
miRNA:   3'- cucCCUGGGGG-----CAGGCGGAuaGUCUG- -5'
3579 5' -60 NC_001650.1 + 126677 0.71 0.51073
Target:  5'- cGAcGGACCCCCGUCCcccacgcGCgCgcUCGGACg -3'
miRNA:   3'- -CUcCCUGGGGGCAGG-------CG-GauAGUCUG- -5'
3579 5' -60 NC_001650.1 + 21758 0.71 0.493059
Target:  5'- gGAGGGACCCCCGggUCCaCCg--CAGcCg -3'
miRNA:   3'- -CUCCCUGGGGGC--AGGcGGauaGUCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.