miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 5' -61.7 NC_001650.1 + 123950 0.66 0.694745
Target:  5'- -uGGGGCCCAcGGGGGuGgaGUaCACg -3'
miRNA:   3'- auCCCUGGGU-CCCCCuCaaCGgGUGa -5'
3581 5' -61.7 NC_001650.1 + 130033 0.66 0.694745
Target:  5'- aAGGG-CCagaucgacgAGGGGGAGcggGCCUACg -3'
miRNA:   3'- aUCCCuGGg--------UCCCCCUCaa-CGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 95726 0.66 0.68501
Target:  5'- gGGGGuuugGCCCGGGGcGGGGaaacucCCCGCg -3'
miRNA:   3'- aUCCC----UGGGUCCC-CCUCaac---GGGUGa -5'
3581 5' -61.7 NC_001650.1 + 5867 0.66 0.674255
Target:  5'- aUGGGGGcuacccacuaagcCCCGGGGgucuaaGGGGgccGCCCACUc -3'
miRNA:   3'- -AUCCCU-------------GGGUCCC------CCUCaa-CGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 172574 0.66 0.674255
Target:  5'- aUGGGGGcuacccacuaagcCCCGGGGgucuaaGGGGgccGCCCACUc -3'
miRNA:   3'- -AUCCCU-------------GGGUCCC------CCUCaa-CGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 50911 0.66 0.674255
Target:  5'- aAGGugcacguGACCCAGGGGGucaccUGCCC-Cg -3'
miRNA:   3'- aUCC-------CUGGGUCCCCCuca--ACGGGuGa -5'
3581 5' -61.7 NC_001650.1 + 130575 0.66 0.665426
Target:  5'- cAGGGGCCguGGaGcuccacgaguuGGAGUgcgcGCCCACg -3'
miRNA:   3'- aUCCCUGGguCC-C-----------CCUCAa---CGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 184406 0.66 0.665426
Target:  5'- --uGGGCCUgagaaaauggAGGGGGcGUgGCCCACUu -3'
miRNA:   3'- aucCCUGGG----------UCCCCCuCAaCGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 17699 0.66 0.665426
Target:  5'- --uGGGCCUgagaaaauggAGGGGGcGUgGCCCACUu -3'
miRNA:   3'- aucCCUGGG----------UCCCCCuCAaCGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 174968 0.66 0.664443
Target:  5'- cGGGGGCCaauGGGGGGccuGUggguauuacucaaUGCCCAgUg -3'
miRNA:   3'- aUCCCUGGg--UCCCCCu--CA-------------ACGGGUgA- -5'
3581 5' -61.7 NC_001650.1 + 8261 0.66 0.664443
Target:  5'- cGGGGGCCaauGGGGGGccuGUggguauuacucaaUGCCCAgUg -3'
miRNA:   3'- aUCCCUGGg--UCCCCCu--CA-------------ACGGGUgA- -5'
3581 5' -61.7 NC_001650.1 + 131404 0.66 0.655592
Target:  5'- -cGGGACaugcuggacaaCCAGuGGGGGGacauagcgGCCCACg -3'
miRNA:   3'- auCCCUG-----------GGUC-CCCCUCaa------CGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 166726 0.66 0.653623
Target:  5'- gAGGGGcaaaagacCCCGGGGGGAGagaacacggggGgCCACa -3'
miRNA:   3'- aUCCCU--------GGGUCCCCCUCaa---------CgGGUGa -5'
3581 5' -61.7 NC_001650.1 + 19 0.66 0.653623
Target:  5'- gAGGGGcaaaagacCCCGGGGGGAGagaacacggggGgCCACa -3'
miRNA:   3'- aUCCCU--------GGGUCCCCCUCaa---------CgGGUGa -5'
3581 5' -61.7 NC_001650.1 + 77861 0.66 0.645742
Target:  5'- cAGGGGCagAGGGuGGAGaagGCCgCGCUg -3'
miRNA:   3'- aUCCCUGggUCCC-CCUCaa-CGG-GUGA- -5'
3581 5' -61.7 NC_001650.1 + 93607 0.66 0.645742
Target:  5'- uUGGuGGuCCaCAGGGuGGGGgUGCCCAUc -3'
miRNA:   3'- -AUC-CCuGG-GUCCC-CCUCaACGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 31268 0.66 0.645742
Target:  5'- cAGGGACUCgAGcGGGGAGggucUGUgCGCg -3'
miRNA:   3'- aUCCCUGGG-UC-CCCCUCa---ACGgGUGa -5'
3581 5' -61.7 NC_001650.1 + 169622 0.67 0.635881
Target:  5'- ---uGGCCCAGGGGG-GcUGUCCAUUa -3'
miRNA:   3'- auccCUGGGUCCCCCuCaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 168479 0.67 0.635881
Target:  5'- -uGGaGGCCCuGuGGGAGgUGCCCAUUa -3'
miRNA:   3'- auCC-CUGGGuCcCCCUCaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 2915 0.67 0.635881
Target:  5'- ---uGGCCCAGGGGG-GcUGUCCAUUa -3'
miRNA:   3'- auccCUGGGUCCCCCuCaACGGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.