Results 1 - 20 of 167 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 173376 | 1.09 | 0.000772 |
Target: 5'- aGCCCAUGGCCCAAUGGGGGCUGCCCAu -3' miRNA: 3'- -CGGGUACCGGGUUACCCCCGACGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 6669 | 1.09 | 0.000772 |
Target: 5'- aGCCCAUGGCCCAAUGGGGGCUGCCCAu -3' miRNA: 3'- -CGGGUACCGGGUUACCCCCGACGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 7259 | 1.05 | 0.001628 |
Target: 5'- aGCCCAUGGCCCAAUGGGGGCUGUCCAc -3' miRNA: 3'- -CGGGUACCGGGUUACCCCCGACGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 173966 | 1.05 | 0.001628 |
Target: 5'- aGCCCAUGGCCCAAUGGGGGCUGUCCAc -3' miRNA: 3'- -CGGGUACCGGGUUACCCCCGACGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 174312 | 1.02 | 0.002427 |
Target: 5'- aGCCCGUGGCCCAAUGGGGGCUGuCCCAc -3' miRNA: 3'- -CGGGUACCGGGUUACCCCCGAC-GGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 7605 | 1.02 | 0.002427 |
Target: 5'- aGCCCGUGGCCCAAUGGGGGCUGuCCCAc -3' miRNA: 3'- -CGGGUACCGGGUUACCCCCGAC-GGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 174424 | 0.98 | 0.005112 |
Target: 5'- aGCCCGUGGCCCAAUGGGGGCUaCCCAc -3' miRNA: 3'- -CGGGUACCGGGUUACCCCCGAcGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 173497 | 0.98 | 0.005112 |
Target: 5'- aGCCCAUGGCCCAAUGGGGGCuuagggguacUGCCCAc -3' miRNA: 3'- -CGGGUACCGGGUUACCCCCG----------ACGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 7717 | 0.98 | 0.005112 |
Target: 5'- aGCCCGUGGCCCAAUGGGGGCUaCCCAc -3' miRNA: 3'- -CGGGUACCGGGUUACCCCCGAcGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 7371 | 0.94 | 0.010468 |
Target: 5'- aGCCCAUGGCCCAAUGGGGaCUGUCCAc -3' miRNA: 3'- -CGGGUACCGGGUUACCCCcGACGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 174078 | 0.94 | 0.010468 |
Target: 5'- aGCCCAUGGCCCAAUGGGGaCUGUCCAc -3' miRNA: 3'- -CGGGUACCGGGUUACCCCcGACGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 2903 | 0.88 | 0.027091 |
Target: 5'- aGCCCAcccuauUGGCCCAG-GGGGGCUGUCCAu -3' miRNA: 3'- -CGGGU------ACCGGGUUaCCCCCGACGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 169610 | 0.88 | 0.027091 |
Target: 5'- aGCCCAcccuauUGGCCCAG-GGGGGCUGUCCAu -3' miRNA: 3'- -CGGGU------ACCGGGUUaCCCCCGACGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 172755 | 0.87 | 0.031713 |
Target: 5'- uCCCaAUGGCCCAAUGGGGGCcuagggggccUGCCCAc -3' miRNA: 3'- cGGG-UACCGGGUUACCCCCG----------ACGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 6790 | 0.87 | 0.03342 |
Target: 5'- aGCCCAU-GCCCAAUGGGGGCuuagggguacUGCCCAc -3' miRNA: 3'- -CGGGUAcCGGGUUACCCCCG----------ACGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 6048 | 0.87 | 0.031713 |
Target: 5'- uCCCaAUGGCCCAAUGGGGGCcuagggggccUGCCCAc -3' miRNA: 3'- cGGG-UACCGGGUUACCCCCG----------ACGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 7482 | 0.83 | 0.054834 |
Target: 5'- uCCCGgcGGCCCAAUGGGGGCUaCCCAc -3' miRNA: 3'- cGGGUa-CCGGGUUACCCCCGAcGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 174189 | 0.83 | 0.054834 |
Target: 5'- uCCCGgcGGCCCAAUGGGGGCUaCCCAc -3' miRNA: 3'- cGGGUa-CCGGGUUACCCCCGAcGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 173223 | 0.83 | 0.056273 |
Target: 5'- cCCCAUGGCCCAAUagggacccagGGGGaGUUGCCCAc -3' miRNA: 3'- cGGGUACCGGGUUA----------CCCC-CGACGGGU- -5' |
|||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 6516 | 0.83 | 0.056273 |
Target: 5'- cCCCAUGGCCCAAUagggacccagGGGGaGUUGCCCAc -3' miRNA: 3'- cGGGUACCGGGUUA----------CCCC-CGACGGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home