miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 3' -47.5 NC_001650.1 + 47450 0.66 0.999934
Target:  5'- gUGUuuaggGAGCgAggGGGUAGCUgcgaggGUCUCu -3'
miRNA:   3'- -ACAua---CUCGgUaaCCCAUUGA------UAGGG- -5'
3583 3' -47.5 NC_001650.1 + 5975 0.66 0.999912
Target:  5'- ---uUGGGCCuUUGGGaAAUUA-CCCa -3'
miRNA:   3'- acauACUCGGuAACCCaUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 19430 0.66 0.999851
Target:  5'- aGUAgaccgaGGGCCugcuGUUGGGgugAGCUGUggaCCCa -3'
miRNA:   3'- aCAUa-----CUCGG----UAACCCa--UUGAUA---GGG- -5'
3583 3' -47.5 NC_001650.1 + 75520 0.66 0.999851
Target:  5'- cGUccGcGGCCGcaggGGGgcGCUGUUCCa -3'
miRNA:   3'- aCAuaC-UCGGUaa--CCCauUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 174200 0.66 0.999808
Target:  5'- gGUGUGGGagaUAgUGGGUAGCc--CCCa -3'
miRNA:   3'- aCAUACUCg--GUaACCCAUUGauaGGG- -5'
3583 3' -47.5 NC_001650.1 + 7493 0.66 0.999808
Target:  5'- gGUGUGGGagaUAgUGGGUAGCc--CCCa -3'
miRNA:   3'- aCAUACUCg--GUaACCCAUUGauaGGG- -5'
3583 3' -47.5 NC_001650.1 + 37713 0.67 0.999754
Target:  5'- cGg--GuGCCcgUGGGccAGCUGUCCUu -3'
miRNA:   3'- aCauaCuCGGuaACCCa-UUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 156455 0.67 0.999754
Target:  5'- --cGUGAGCCug-GGGgcagAAgUGUCCa -3'
miRNA:   3'- acaUACUCGGuaaCCCa---UUgAUAGGg -5'
3583 3' -47.5 NC_001650.1 + 129219 0.67 0.999687
Target:  5'- gGUGgagggGGGUCGagGGGaAGCUGUCCg -3'
miRNA:   3'- aCAUa----CUCGGUaaCCCaUUGAUAGGg -5'
3583 3' -47.5 NC_001650.1 + 122458 0.67 0.999605
Target:  5'- gGUGagGAGCUcgUGGGgcAcCUcgCCCc -3'
miRNA:   3'- aCAUa-CUCGGuaACCCauU-GAuaGGG- -5'
3583 3' -47.5 NC_001650.1 + 165991 0.67 0.999605
Target:  5'- aGUGUGuGUgGggGGGUGuaggagaUGUCCCa -3'
miRNA:   3'- aCAUACuCGgUaaCCCAUug-----AUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 111389 0.67 0.999605
Target:  5'- ---cUGAGCCGccUGGGccUGACUGggaCCCg -3'
miRNA:   3'- acauACUCGGUa-ACCC--AUUGAUa--GGG- -5'
3583 3' -47.5 NC_001650.1 + 7837 0.67 0.999605
Target:  5'- ---uUGGGCCAcUGGGUGcAUgg-CCCg -3'
miRNA:   3'- acauACUCGGUaACCCAU-UGauaGGG- -5'
3583 3' -47.5 NC_001650.1 + 174544 0.67 0.999605
Target:  5'- ---uUGGGCCAcUGGGUGcAUgg-CCCg -3'
miRNA:   3'- acauACUCGGUaACCCAU-UGauaGGG- -5'
3583 3' -47.5 NC_001650.1 + 5874 0.67 0.999605
Target:  5'- ----aGGGCCAaUGGG-GGCUA-CCCa -3'
miRNA:   3'- acauaCUCGGUaACCCaUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 172581 0.67 0.999605
Target:  5'- ----aGGGCCAaUGGG-GGCUA-CCCa -3'
miRNA:   3'- acauaCUCGGUaACCCaUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 7133 0.67 0.999596
Target:  5'- ---cUGAGCCcccAUUGGGUaugggagauagugGACaGUCCCc -3'
miRNA:   3'- acauACUCGG---UAACCCA-------------UUGaUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 173840 0.67 0.999596
Target:  5'- ---cUGAGCCcccAUUGGGUaugggagauagugGACaGUCCCc -3'
miRNA:   3'- acauACUCGG---UAACCCA-------------UUGaUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 172681 0.68 0.999384
Target:  5'- ---uUGGGCCuUUGGGaUAAUUA-CCCa -3'
miRNA:   3'- acauACUCGGuAACCC-AUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 172904 0.68 0.999384
Target:  5'- ---uUGGGCCuUUGGGaUAAUUA-CCCg -3'
miRNA:   3'- acauACUCGGuAACCC-AUUGAUaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.