miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3593 5' -56.7 NC_001650.1 + 157289 0.66 0.903306
Target:  5'- cGCCu-GGGGGGCAccUCcccgCCCCCGc- -3'
miRNA:   3'- -CGGcuCCCUCCGUa-AGaa--GGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 22838 0.66 0.899527
Target:  5'- cCCGAG-GAGGCGgucUCUgagcugagccacuucUCCCCCGg- -3'
miRNA:   3'- cGGCUCcCUCCGUa--AGA---------------AGGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 62090 0.66 0.896962
Target:  5'- gGCUGAGGGcGGUgccgGUuucuccUCUUCCUCCAc- -3'
miRNA:   3'- -CGGCUCCCuCCG----UA------AGAAGGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 48250 0.66 0.883598
Target:  5'- cUCGAGGGGGGCug-CUUccaggcggcuagCCCCCu-- -3'
miRNA:   3'- cGGCUCCCUCCGuaaGAA------------GGGGGuau -5'
3593 5' -56.7 NC_001650.1 + 32146 0.66 0.883598
Target:  5'- gGCCGAGagcagcgaGAGGC--UUUUCUCCCAUAc -3'
miRNA:   3'- -CGGCUCc-------CUCCGuaAGAAGGGGGUAU- -5'
3593 5' -56.7 NC_001650.1 + 184083 0.67 0.861923
Target:  5'- cUCGGGGGuGGCcaUCUcagugggaagCCCCCAUAa -3'
miRNA:   3'- cGGCUCCCuCCGuaAGAa---------GGGGGUAU- -5'
3593 5' -56.7 NC_001650.1 + 30413 0.67 0.861923
Target:  5'- cCCGAGaGGAGGuCcgUCaggaCCCCCAg- -3'
miRNA:   3'- cGGCUC-CCUCC-GuaAGaa--GGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 141230 0.67 0.861923
Target:  5'- gGUCaGAGGGGGGCGUguagcUCUUCUgCCu-- -3'
miRNA:   3'- -CGG-CUCCCUCCGUA-----AGAAGGgGGuau -5'
3593 5' -56.7 NC_001650.1 + 17376 0.67 0.861923
Target:  5'- cUCGGGGGuGGCcaUCUcagugggaagCCCCCAUAa -3'
miRNA:   3'- cGGCUCCCuCCGuaAGAa---------GGGGGUAU- -5'
3593 5' -56.7 NC_001650.1 + 53429 0.67 0.861923
Target:  5'- gGUCaGAGGGGGGCGUguagcUCUUCUgCCu-- -3'
miRNA:   3'- -CGG-CUCCCUCCGUA-----AGAAGGgGGuau -5'
3593 5' -56.7 NC_001650.1 + 32238 0.67 0.846446
Target:  5'- aCC-AGGGGGGCAg---UCCCCuCGUAg -3'
miRNA:   3'- cGGcUCCCUCCGUaagaAGGGG-GUAU- -5'
3593 5' -56.7 NC_001650.1 + 58837 0.67 0.838417
Target:  5'- gGCCcGGGaGAGGCAgaugagCCCCCAc- -3'
miRNA:   3'- -CGGcUCC-CUCCGUaagaa-GGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 18012 0.67 0.838417
Target:  5'- cCCG-GGGAGGUGUgaauuUUUUCCCUCAa- -3'
miRNA:   3'- cGGCuCCCUCCGUA-----AGAAGGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 129142 0.68 0.830204
Target:  5'- gGCCGAGgacacGGGGGCGgcccUCUUCgCCCu-- -3'
miRNA:   3'- -CGGCUC-----CCUCCGUa---AGAAGgGGGuau -5'
3593 5' -56.7 NC_001650.1 + 59967 0.68 0.813256
Target:  5'- uCCGuGGGGGGCGccucgCCCCCGg- -3'
miRNA:   3'- cGGCuCCCUCCGUaagaaGGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 21807 0.68 0.812391
Target:  5'- gGCCGAggccccggggaggGGGAGGCGacca-CCCCCAUc -3'
miRNA:   3'- -CGGCU-------------CCCUCCGUaagaaGGGGGUAu -5'
3593 5' -56.7 NC_001650.1 + 58181 0.68 0.804535
Target:  5'- uGCCGuGGGAGGg--UCUUCgccgCCCCGa- -3'
miRNA:   3'- -CGGCuCCCUCCguaAGAAG----GGGGUau -5'
3593 5' -56.7 NC_001650.1 + 72959 0.68 0.795661
Target:  5'- -aCGAGGaGuGGCAcaagUCCCCCAUGg -3'
miRNA:   3'- cgGCUCC-CuCCGUaagaAGGGGGUAU- -5'
3593 5' -56.7 NC_001650.1 + 120882 0.68 0.795661
Target:  5'- cGCUGGGGGcGGCGcgCgacaacgCCCCCAa- -3'
miRNA:   3'- -CGGCUCCCuCCGUaaGaa-----GGGGGUau -5'
3593 5' -56.7 NC_001650.1 + 158550 0.68 0.786641
Target:  5'- cGCCGAGGGGGGCGccUUUgUCaugagggaCCCGg- -3'
miRNA:   3'- -CGGCUCCCUCCGU--AAGaAGg-------GGGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.