miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 181882 0.69 0.958296
Target:  5'- cGGGCGCGgcgcGggGUGuCugGggGUCGCGg -3'
miRNA:   3'- -CCCGUGCau--CuuCAU-GugU--CAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 178690 0.74 0.819836
Target:  5'- uGGGCACGggGGucuGAGUGCAUgggggucccgguGGUCGCGg -3'
miRNA:   3'- -CCCGUGCa-UC---UUCAUGUG------------UCAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 169060 0.67 0.991872
Target:  5'- gGGGCAgGguuagagagauGAGGUAgGCAGUUGC-Ca -3'
miRNA:   3'- -CCCGUgCau---------CUUCAUgUGUCAGCGcG- -5'
3596 5' -51.6 NC_001650.1 + 168643 0.66 0.992912
Target:  5'- uGGGUugGgucagggggauGAGGUAgGCGGUUGCcagGCa -3'
miRNA:   3'- -CCCGugCau---------CUUCAUgUGUCAGCG---CG- -5'
3596 5' -51.6 NC_001650.1 + 168507 0.66 0.995548
Target:  5'- gGGGUuuAUGgaguGAGGUAgGCAGUUGCcagGCa -3'
miRNA:   3'- -CCCG--UGCau--CUUCAUgUGUCAGCG---CG- -5'
3596 5' -51.6 NC_001650.1 + 164727 0.68 0.978843
Target:  5'- aGGGCcgccugaGCGaGGAGGggga-GGUCGCGCg -3'
miRNA:   3'- -CCCG-------UGCaUCUUCaugugUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 157979 0.68 0.976708
Target:  5'- uGGGCGacuuuuugccCGUGGGAGgGC-CGGaCGCGCc -3'
miRNA:   3'- -CCCGU----------GCAUCUUCaUGuGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 157498 0.67 0.992089
Target:  5'- cGGGgGCGgGGAGGUGCcccCAG--GCGCa -3'
miRNA:   3'- -CCCgUGCaUCUUCAUGu--GUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 156210 0.77 0.665139
Target:  5'- gGGGCACGUGGuGGUcACGCAGggGgGCu -3'
miRNA:   3'- -CCCGUGCAUCuUCA-UGUGUCagCgCG- -5'
3596 5' -51.6 NC_001650.1 + 155838 0.72 0.89658
Target:  5'- gGGGCuCGUGGugagcgGGGU-CACGGgggCGCGCg -3'
miRNA:   3'- -CCCGuGCAUC------UUCAuGUGUCa--GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 155772 0.67 0.990956
Target:  5'- gGGGCugGUGGccGAGcGCGCGGccagggagacCGUGCu -3'
miRNA:   3'- -CCCGugCAUC--UUCaUGUGUCa---------GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 155185 0.66 0.996123
Target:  5'- aGGGCgaucaugcccaggGCGUccaGGGAGUACucCAGcccgucCGCGCg -3'
miRNA:   3'- -CCCG-------------UGCA---UCUUCAUGu-GUCa-----GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 154516 0.7 0.946104
Target:  5'- uGGGCAUGUAGuaccuGGgGCACgAGUCugGCGUc -3'
miRNA:   3'- -CCCGUGCAUCu----UCaUGUG-UCAG--CGCG- -5'
3596 5' -51.6 NC_001650.1 + 148494 0.68 0.974155
Target:  5'- uGGGCAUcgGGggGUACuuuaaAGagGCGCu -3'
miRNA:   3'- -CCCGUGcaUCuuCAUGug---UCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 148039 0.69 0.968449
Target:  5'- aGGGCGCgGUGGAGcgGCGC-GUCuaGCGCc -3'
miRNA:   3'- -CCCGUG-CAUCUUcaUGUGuCAG--CGCG- -5'
3596 5' -51.6 NC_001650.1 + 143051 0.67 0.992089
Target:  5'- cGGGcCACGcGGAGG-GCGCcGagGCGCu -3'
miRNA:   3'- -CCC-GUGCaUCUUCaUGUGuCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 142337 0.74 0.811088
Target:  5'- cGGCugGaAGGAGUGCucCAGgagcCGCGCg -3'
miRNA:   3'- cCCGugCaUCUUCAUGu-GUCa---GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 136323 0.71 0.931259
Target:  5'- uGGCACGUgaGGAGGUagguggcgaagcaGgACAGgucCGCGCa -3'
miRNA:   3'- cCCGUGCA--UCUUCA-------------UgUGUCa--GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 136263 0.66 0.994017
Target:  5'- gGGGCugG-GGGAGUACucuCuGccccUCGUGCg -3'
miRNA:   3'- -CCCGugCaUCUUCAUGu--GuC----AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 132880 0.71 0.931774
Target:  5'- aGGCGCGagcgGGAGGUgguggAgGCGGUgGCGCc -3'
miRNA:   3'- cCCGUGCa---UCUUCA-----UgUGUCAgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.