miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3598 3' -67.2 NC_001650.1 + 118759 0.66 0.505478
Target:  5'- cCCCCGcCGcCCCCCuCCucGGuGCGCa -3'
miRNA:   3'- -GGGGCcGCaGGGGGuGGucCCcCGCG- -5'
3598 3' -67.2 NC_001650.1 + 6966 0.66 0.470947
Target:  5'- aCCUGG-GUUgCCaggcagACUAGGGGGUGCu -3'
miRNA:   3'- gGGGCCgCAGgGGg-----UGGUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 27044 0.66 0.470947
Target:  5'- gCCCCGGgcagcagGUgCCCCAggUCGGccaacucgaaGGGGCGCg -3'
miRNA:   3'- -GGGGCCg------CAgGGGGU--GGUC----------CCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 31067 0.66 0.488069
Target:  5'- uCCCCGcucgaGUCCCUguuUugC-GGGGGCGUg -3'
miRNA:   3'- -GGGGCcg---CAGGGG---GugGuCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 130819 0.66 0.470947
Target:  5'- aCCUGGCgGUCCUCCAggAGGaGGCGg -3'
miRNA:   3'- gGGGCCG-CAGGGGGUggUCCcCCGCg -5'
3598 3' -67.2 NC_001650.1 + 30518 0.66 0.500227
Target:  5'- gCCCUGcGCGUCCUgcuucgcggaggcggCCAugcugcccaaUCAGGGGGagaGCg -3'
miRNA:   3'- -GGGGC-CGCAGGG---------------GGU----------GGUCCCCCg--CG- -5'
3598 3' -67.2 NC_001650.1 + 173533 0.66 0.523149
Target:  5'- gCCCCuGCca-CCCauuggGCCAGGGGGCu- -3'
miRNA:   3'- -GGGGcCGcagGGGg----UGGUCCCCCGcg -5'
3598 3' -67.2 NC_001650.1 + 79397 0.66 0.514283
Target:  5'- gCCCCGuCG-CgCCC-CCGGGcGGCGCc -3'
miRNA:   3'- -GGGGCcGCaGgGGGuGGUCCcCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 47918 0.66 0.470099
Target:  5'- gCCCCGcGUGucucaucUCCUCCAucCCAGcaaaaGGGCGCg -3'
miRNA:   3'- -GGGGC-CGC-------AGGGGGU--GGUCc----CCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 88732 0.66 0.470947
Target:  5'- uCCUCGGgGaagCCCCCgGCCGGcaagcGGGGCa- -3'
miRNA:   3'- -GGGGCCgCa--GGGGG-UGGUC-----CCCCGcg -5'
3598 3' -67.2 NC_001650.1 + 117364 0.66 0.523149
Target:  5'- cCCCCucuGaCGUgCCCCuccuaaaguACCAcGGGGGCGa -3'
miRNA:   3'- -GGGGc--C-GCAgGGGG---------UGGU-CCCCCGCg -5'
3598 3' -67.2 NC_001650.1 + 24527 0.66 0.505478
Target:  5'- gCCCGGCuG-CCCCUACCcccuGGccGCGCu -3'
miRNA:   3'- gGGGCCG-CaGGGGGUGGu---CCccCGCG- -5'
3598 3' -67.2 NC_001650.1 + 76797 0.66 0.479471
Target:  5'- gCCaCGuGCGccUCCCUCACgAaGGGGUGCa -3'
miRNA:   3'- gGG-GC-CGC--AGGGGGUGgUcCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 40448 0.66 0.505478
Target:  5'- cCCCCauCGUCCUCCAgCAGa-GGCGCc -3'
miRNA:   3'- -GGGGccGCAGGGGGUgGUCccCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 51017 0.66 0.487206
Target:  5'- gCgCGGCGgCCCCCuCUcagaucaAGGuGGGCGUg -3'
miRNA:   3'- gGgGCCGCaGGGGGuGG-------UCC-CCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 96236 0.66 0.487206
Target:  5'- gCCUgGGCG-CCCCCGggucgcuggucauCCuGGGuGGCGa -3'
miRNA:   3'- -GGGgCCGCaGGGGGU-------------GGuCCC-CCGCg -5'
3598 3' -67.2 NC_001650.1 + 173673 0.66 0.470947
Target:  5'- aCCUGG-GUUgCCaggcagACUAGGGGGUGCu -3'
miRNA:   3'- gGGGCCgCAGgGGg-----UGGUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 27468 0.66 0.470947
Target:  5'- gCCCGG-GUCCagaagcaggccUCCaACCGGGGcGGCGg -3'
miRNA:   3'- gGGGCCgCAGG-----------GGG-UGGUCCC-CCGCg -5'
3598 3' -67.2 NC_001650.1 + 6826 0.66 0.523149
Target:  5'- gCCCCuGCca-CCCauuggGCCAGGGGGCu- -3'
miRNA:   3'- -GGGGcCGcagGGGg----UGGUCCCCCGcg -5'
3598 3' -67.2 NC_001650.1 + 60853 0.66 0.476906
Target:  5'- aCCCCaggcagcuggagacGGUGgCCCCCcucaACCGGcaGGGCGCc -3'
miRNA:   3'- -GGGG--------------CCGCaGGGGG----UGGUCc-CCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.