miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3598 3' -67.2 NC_001650.1 + 21982 1.1 0.000397
Target:  5'- uCCCCGGCGUCCCCCACCAGGGGGCGCc -3'
miRNA:   3'- -GGGGCCGCAGGGGGUGGUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 17973 0.84 0.029681
Target:  5'- cCCCCGggggugaagaagaGCGcCCCCCACguGGGGGCGCu -3'
miRNA:   3'- -GGGGC-------------CGCaGGGGGUGguCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 35807 0.79 0.072081
Target:  5'- --gCGGcCGUCCCgCGCCAgGGGGGCGCg -3'
miRNA:   3'- gggGCC-GCAGGGgGUGGU-CCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 90406 0.77 0.103415
Target:  5'- cUCCC-GCuUCCCcaccgCCGCCAGGGGGCGCc -3'
miRNA:   3'- -GGGGcCGcAGGG-----GGUGGUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 18212 0.76 0.116457
Target:  5'- uCCCCauacuGGCagagcgCCCCCACgUGGGGGGCGCu -3'
miRNA:   3'- -GGGG-----CCGca----GGGGGUG-GUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 125239 0.76 0.116457
Target:  5'- gCCCGGCGUCCUCCGCCcccGGGacccccucuGGCGa -3'
miRNA:   3'- gGGGCCGCAGGGGGUGGu--CCC---------CCGCg -5'
3598 3' -67.2 NC_001650.1 + 26513 0.76 0.121805
Target:  5'- uCCCCguggaggaGGCGUCCCuccugggcaaccuCCACgCGGGGGGCGa -3'
miRNA:   3'- -GGGG--------CCGCAGGG-------------GGUG-GUCCCCCGCg -5'
3598 3' -67.2 NC_001650.1 + 78198 0.76 0.12798
Target:  5'- cCCUCGG-GUCCCCCGCaccugagcuuGGuGGGCGCg -3'
miRNA:   3'- -GGGGCCgCAGGGGGUGgu--------CC-CCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 82633 0.75 0.131021
Target:  5'- cCCCaCGGcCGUCCCCUGCCAGuuGGCGg -3'
miRNA:   3'- -GGG-GCC-GCAGGGGGUGGUCccCCGCg -5'
3598 3' -67.2 NC_001650.1 + 25130 0.74 0.157846
Target:  5'- cCCCCGcaGgGUCCUaaaggCCACCGcGGGGGUGCu -3'
miRNA:   3'- -GGGGC--CgCAGGG-----GGUGGU-CCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 106948 0.74 0.157846
Target:  5'- uCCCUGGCGgCCCU----GGGGGGCGCg -3'
miRNA:   3'- -GGGGCCGCaGGGGguggUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 71828 0.74 0.15931
Target:  5'- gCCCGGCG-CgCCCACCgcguaaaagucaaacAGGGGGUGg -3'
miRNA:   3'- gGGGCCGCaGgGGGUGG---------------UCCCCCGCg -5'
3598 3' -67.2 NC_001650.1 + 50856 0.74 0.161529
Target:  5'- cCCCCcGCGggcaccggCCCCU-CgAGGGGGCGCa -3'
miRNA:   3'- -GGGGcCGCa-------GGGGGuGgUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 78881 0.74 0.169127
Target:  5'- gCCC-GCGUCCUCCGCCAGGccguGGCGg -3'
miRNA:   3'- gGGGcCGCAGGGGGUGGUCCc---CCGCg -5'
3598 3' -67.2 NC_001650.1 + 121787 0.74 0.169127
Target:  5'- cCUCCGcCG-CCCCCGcgguCCAGGGGGuCGCg -3'
miRNA:   3'- -GGGGCcGCaGGGGGU----GGUCCCCC-GCG- -5'
3598 3' -67.2 NC_001650.1 + 46473 0.73 0.176641
Target:  5'- aCCUCGGgGUCagCCACCGgucgcgcGGGGGCGUg -3'
miRNA:   3'- -GGGGCCgCAGggGGUGGU-------CCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 67087 0.73 0.185289
Target:  5'- cCCCCGGCucgCCCCCGCCccc-GGCGCc -3'
miRNA:   3'- -GGGGCCGca-GGGGGUGGucccCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 61232 0.73 0.189537
Target:  5'- cCCCCGccCGUCCCCgGCCAcguGGaGGGCGg -3'
miRNA:   3'- -GGGGCc-GCAGGGGgUGGU---CC-CCCGCg -5'
3598 3' -67.2 NC_001650.1 + 175557 0.73 0.189537
Target:  5'- cCCUCGGUGUCgCCCCcucgcggacgcuGCCuGGGagcGGCGCg -3'
miRNA:   3'- -GGGGCCGCAG-GGGG------------UGGuCCC---CCGCG- -5'
3598 3' -67.2 NC_001650.1 + 8850 0.73 0.189537
Target:  5'- cCCUCGGUGUCgCCCCcucgcggacgcuGCCuGGGagcGGCGCg -3'
miRNA:   3'- -GGGGCCGCAG-GGGG------------UGGuCCC---CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.