miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3598 3' -67.2 NC_001650.1 + 1454 0.68 0.405753
Target:  5'- cCCCCGGC-UCCCauugGCCGGGaGGGaUGUu -3'
miRNA:   3'- -GGGGCCGcAGGGgg--UGGUCC-CCC-GCG- -5'
3598 3' -67.2 NC_001650.1 + 1492 0.72 0.236891
Target:  5'- aCCCaugaugGGCGUCCCaucuagCCAaugggggcCCGGGGGGCGg -3'
miRNA:   3'- -GGGg-----CCGCAGGG------GGU--------GGUCCCCCGCg -5'
3598 3' -67.2 NC_001650.1 + 2007 0.67 0.459983
Target:  5'- aCCCGGCccacccUCUCCCcauuggccauggagGCCAGGGGGg-- -3'
miRNA:   3'- gGGGCCGc-----AGGGGG--------------UGGUCCCCCgcg -5'
3598 3' -67.2 NC_001650.1 + 3254 0.7 0.293765
Target:  5'- gCCCGGCGacgucagCUgUUGCCAGGGGGCu- -3'
miRNA:   3'- gGGGCCGCa------GGgGGUGGUCCCCCGcg -5'
3598 3' -67.2 NC_001650.1 + 6826 0.66 0.523149
Target:  5'- gCCCCuGCca-CCCauuggGCCAGGGGGCu- -3'
miRNA:   3'- -GGGGcCGcagGGGg----UGGUCCCCCGcg -5'
3598 3' -67.2 NC_001650.1 + 6966 0.66 0.470947
Target:  5'- aCCUGG-GUUgCCaggcagACUAGGGGGUGCu -3'
miRNA:   3'- gGGGCCgCAGgGGg-----UGGUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 7483 0.66 0.514283
Target:  5'- aUCCCGGCGg--CCCAau-GGGGGCu- -3'
miRNA:   3'- -GGGGCCGCaggGGGUgguCCCCCGcg -5'
3598 3' -67.2 NC_001650.1 + 7923 0.68 0.39036
Target:  5'- uUCCacuaaGUCCCCCACCcaauGGGGGCu- -3'
miRNA:   3'- -GGGgccg-CAGGGGGUGGu---CCCCCGcg -5'
3598 3' -67.2 NC_001650.1 + 8332 0.69 0.339581
Target:  5'- aCCCCcauagCCCCCACCAccccGGGGGUGa -3'
miRNA:   3'- -GGGGccgcaGGGGGUGGU----CCCCCGCg -5'
3598 3' -67.2 NC_001650.1 + 8690 0.67 0.454135
Target:  5'- aCUCUGGUcUUCCCCACuCuGGuGGGCGg -3'
miRNA:   3'- -GGGGCCGcAGGGGGUG-GuCC-CCCGCg -5'
3598 3' -67.2 NC_001650.1 + 8850 0.73 0.189537
Target:  5'- cCCUCGGUGUCgCCCCcucgcggacgcuGCCuGGGagcGGCGCg -3'
miRNA:   3'- -GGGGCCGCAG-GGGG------------UGGuCCC---CCGCG- -5'
3598 3' -67.2 NC_001650.1 + 8950 0.68 0.367999
Target:  5'- aCCCCGGCa--CCCCG-CAGGGcuGGgGCu -3'
miRNA:   3'- -GGGGCCGcagGGGGUgGUCCC--CCgCG- -5'
3598 3' -67.2 NC_001650.1 + 9069 0.66 0.488069
Target:  5'- cUCCCaGGCaG-CgUCCGCgAGGGGGCGa -3'
miRNA:   3'- -GGGG-CCG-CaGgGGGUGgUCCCCCGCg -5'
3598 3' -67.2 NC_001650.1 + 12198 0.68 0.405753
Target:  5'- -gCCGGUGguugcuggCUUCCAUCaaaucaugcaGGGGGGCGCa -3'
miRNA:   3'- ggGGCCGCa-------GGGGGUGG----------UCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 14128 0.66 0.488069
Target:  5'- uCCCgGGgGUCCa-----GGGGGGCGCc -3'
miRNA:   3'- -GGGgCCgCAGGggguggUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 14872 0.67 0.449155
Target:  5'- uCCCCGaGUGUUaucuaucuuugucuUCUCACCAggccacggcccaacGGGGGUGCu -3'
miRNA:   3'- -GGGGC-CGCAG--------------GGGGUGGU--------------CCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 17973 0.84 0.029681
Target:  5'- cCCCCGggggugaagaagaGCGcCCCCCACguGGGGGCGCu -3'
miRNA:   3'- -GGGGC-------------CGCaGGGGGUGguCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 18212 0.76 0.116457
Target:  5'- uCCCCauacuGGCagagcgCCCCCACgUGGGGGGCGCu -3'
miRNA:   3'- -GGGG-----CCGca----GGGGGUG-GUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 19388 0.67 0.445852
Target:  5'- aUCUCGGcCGUCCUCUuuaagaaaguagGCgAGGGGGCu- -3'
miRNA:   3'- -GGGGCC-GCAGGGGG------------UGgUCCCCCGcg -5'
3598 3' -67.2 NC_001650.1 + 21513 0.66 0.523149
Target:  5'- gCCCUGG-GUUCUCUACCucggcaggcAGGGGGagaugaGCa -3'
miRNA:   3'- -GGGGCCgCAGGGGGUGG---------UCCCCCg-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.