miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3598 3' -67.2 NC_001650.1 + 121384 0.71 0.247478
Target:  5'- -gCUGGCcaucgCCCCgGCC-GGGGGCGCc -3'
miRNA:   3'- ggGGCCGca---GGGGgUGGuCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 24585 0.72 0.207394
Target:  5'- gCCCUGGCgGUgUCCCACCuGGaccuGGCGCa -3'
miRNA:   3'- -GGGGCCG-CAgGGGGUGGuCCc---CCGCG- -5'
3598 3' -67.2 NC_001650.1 + 141240 0.72 0.210665
Target:  5'- gCCCGGgGUCCCCCGguucgcccucggccCCGcGGcggcgagcGGGCGCg -3'
miRNA:   3'- gGGGCCgCAGGGGGU--------------GGU-CC--------CCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 48038 0.72 0.216856
Target:  5'- aCCUGGCGcuguucugCUCgCUGCUGGGGGGCGCc -3'
miRNA:   3'- gGGGCCGCa-------GGG-GGUGGUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 156321 0.72 0.216856
Target:  5'- aCCCGGUGggCCUCgACggggggCAGGGGGUGCc -3'
miRNA:   3'- gGGGCCGCa-GGGGgUG------GUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 45177 0.72 0.221725
Target:  5'- cCCCCGGagccggGUaCCCCCACaAGcgauacccGGGGCGCg -3'
miRNA:   3'- -GGGGCCg-----CA-GGGGGUGgUC--------CCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 52831 0.72 0.236891
Target:  5'- uUCUCGGCGcCCugCCCGCCcuGGGagcGGGCGCg -3'
miRNA:   3'- -GGGGCCGCaGG--GGGUGG--UCC---CCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 22625 0.72 0.236891
Target:  5'- uUUCaGCG-CCCCCagcGCgCGGGGGGCGCg -3'
miRNA:   3'- gGGGcCGCaGGGGG---UG-GUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 131660 0.71 0.242136
Target:  5'- gCCUGcGCG-CCCCCuCCcugaGGGGGGCGg -3'
miRNA:   3'- gGGGC-CGCaGGGGGuGG----UCCCCCGCg -5'
3598 3' -67.2 NC_001650.1 + 23736 0.72 0.207394
Target:  5'- cUCCUGcGCGUCCUCgcggCGCgCGGGGGGCGg -3'
miRNA:   3'- -GGGGC-CGCAGGGG----GUG-GUCCCCCGCg -5'
3598 3' -67.2 NC_001650.1 + 21767 0.72 0.207394
Target:  5'- gCUgCGGCG-CCCCCuggugggggacGCCGGGgaGGGCGCc -3'
miRNA:   3'- -GGgGCCGCaGGGGG-----------UGGUCC--CCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 121066 0.73 0.202798
Target:  5'- gCCCGGgGacgCCgCgGCgCGGGGGGCGCc -3'
miRNA:   3'- gGGGCCgCa--GGgGgUG-GUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 35807 0.79 0.072081
Target:  5'- --gCGGcCGUCCCgCGCCAgGGGGGCGCg -3'
miRNA:   3'- gggGCC-GCAGGGgGUGGU-CCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 26513 0.76 0.121805
Target:  5'- uCCCCguggaggaGGCGUCCCuccugggcaaccuCCACgCGGGGGGCGa -3'
miRNA:   3'- -GGGG--------CCGCAGGG-------------GGUG-GUCCCCCGCg -5'
3598 3' -67.2 NC_001650.1 + 106948 0.74 0.157846
Target:  5'- uCCCUGGCGgCCCU----GGGGGGCGCg -3'
miRNA:   3'- -GGGGCCGCaGGGGguggUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 8850 0.73 0.189537
Target:  5'- cCCUCGGUGUCgCCCCcucgcggacgcuGCCuGGGagcGGCGCg -3'
miRNA:   3'- -GGGGCCGCAG-GGGG------------UGGuCCC---CCGCG- -5'
3598 3' -67.2 NC_001650.1 + 175557 0.73 0.189537
Target:  5'- cCCUCGGUGUCgCCCCcucgcggacgcuGCCuGGGagcGGCGCg -3'
miRNA:   3'- -GGGGCCGCAG-GGGG------------UGGuCCC---CCGCG- -5'
3598 3' -67.2 NC_001650.1 + 61232 0.73 0.189537
Target:  5'- cCCCCGccCGUCCCCgGCCAcguGGaGGGCGg -3'
miRNA:   3'- -GGGGCc-GCAGGGGgUGGU---CC-CCCGCg -5'
3598 3' -67.2 NC_001650.1 + 68750 0.73 0.19829
Target:  5'- gCCCGG-GUCUCCC---GGGGGGCGUa -3'
miRNA:   3'- gGGGCCgCAGGGGGuggUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 23632 0.73 0.202798
Target:  5'- uCCCUcGCcuggCCCCACCucaAGGGGGCGCa -3'
miRNA:   3'- -GGGGcCGcag-GGGGUGG---UCCCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.