miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 3' -65.9 NC_001650.1 + 22842 1.08 0.000685
Target:  5'- gCGUACGCGCCCCCCGCGCGCUGGGGGc -3'
miRNA:   3'- -GCAUGCGCGGGGGGCGCGCGACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 72875 0.67 0.463892
Target:  5'- --gGCGCGUcuugaCCCUgGCGUGCUGGGu- -3'
miRNA:   3'- gcaUGCGCG-----GGGGgCGCGCGACCCcc -5'
3599 3' -65.9 NC_001650.1 + 109405 0.67 0.493234
Target:  5'- aCGUGCagaaGgGCCgCCCCGCGUacgGCUcgucccacucgggccGGGGGc -3'
miRNA:   3'- -GCAUG----CgCGG-GGGGCGCG---CGA---------------CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 109477 0.66 0.580037
Target:  5'- gCGggGCGCcccccacuaucGCCaCCCCGCGgGgaaGGGGGg -3'
miRNA:   3'- -GCa-UGCG-----------CGG-GGGGCGCgCga-CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 183882 0.73 0.216016
Target:  5'- gGUGgGaaGCCCCCUGUGCGCaugaGGGGGu -3'
miRNA:   3'- gCAUgCg-CGGGGGGCGCGCGa---CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 17175 0.73 0.216016
Target:  5'- gGUGgGaaGCCCCCUGUGCGCaugaGGGGGu -3'
miRNA:   3'- gCAUgCg-CGGGGGGCGCGCGa---CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 100651 0.72 0.257889
Target:  5'- gGUACGCGCCgUCCGgGgGCcccUGGGaGGg -3'
miRNA:   3'- gCAUGCGCGGgGGGCgCgCG---ACCC-CC- -5'
3599 3' -65.9 NC_001650.1 + 51371 0.7 0.319272
Target:  5'- --cGCGCGCCgccugCCCCGCGgGCacuaugaccGGGGGc -3'
miRNA:   3'- gcaUGCGCGG-----GGGGCGCgCGa--------CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 121281 0.69 0.375831
Target:  5'- --cGgGCGCCCCCCGCGcCGCggcguccccGGGcaGGg -3'
miRNA:   3'- gcaUgCGCGGGGGGCGC-GCGa--------CCC--CC- -5'
3599 3' -65.9 NC_001650.1 + 23963 0.68 0.447064
Target:  5'- uCGgGCGggucucCGCCCCCCGCGCGCcGcGaGGa -3'
miRNA:   3'- -GCaUGC------GCGGGGGGCGCGCGaC-C-CCc -5'
3599 3' -65.9 NC_001650.1 + 141475 0.68 0.414461
Target:  5'- --cGCGCGCCCgCUCGC-CGCcGcGGGGc -3'
miRNA:   3'- gcaUGCGCGGG-GGGCGcGCGaC-CCCC- -5'
3599 3' -65.9 NC_001650.1 + 111724 0.69 0.368402
Target:  5'- -cUugGCcUCCCCCGUGCGCgcggcgGcGGGGa -3'
miRNA:   3'- gcAugCGcGGGGGGCGCGCGa-----C-CCCC- -5'
3599 3' -65.9 NC_001650.1 + 75532 0.8 0.076437
Target:  5'- aCGUGCGCGCCUcgUCCGCGgcCGCaGGGGGg -3'
miRNA:   3'- -GCAUGCGCGGG--GGGCGC--GCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 131459 0.68 0.414461
Target:  5'- --gGgGgGCCUCCUGCGCGUUGGGc- -3'
miRNA:   3'- gcaUgCgCGGGGGGCGCGCGACCCcc -5'
3599 3' -65.9 NC_001650.1 + 57618 0.76 0.149587
Target:  5'- cCGUGCGCGCCCgggCCGCagGgGgUGGGGGa -3'
miRNA:   3'- -GCAUGCGCGGGg--GGCG--CgCgACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 60327 0.69 0.361075
Target:  5'- gCGgACGCGgCCUCCGCGgGC-GGcGGGu -3'
miRNA:   3'- -GCaUGCGCgGGGGGCGCgCGaCC-CCC- -5'
3599 3' -65.9 NC_001650.1 + 136290 0.68 0.42814
Target:  5'- --gGC-CGCCCCcgccuucauggcggCCGCgGgGCUGGGGGa -3'
miRNA:   3'- gcaUGcGCGGGG--------------GGCG-CgCGACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 18197 0.67 0.48018
Target:  5'- ----aGCGCCCCCaCGUgggggGCGCUcuucuucacccccGGGGGu -3'
miRNA:   3'- gcaugCGCGGGGG-GCG-----CGCGA-------------CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 68167 0.74 0.176008
Target:  5'- aCGUGCGCGCCgUCCucagGCuCGCUaGGGGGg -3'
miRNA:   3'- -GCAUGCGCGGgGGG----CGcGCGA-CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 58163 0.72 0.252312
Target:  5'- cCGgcCGCGCCUCCCGCccaGCUGaGGGu -3'
miRNA:   3'- -GCauGCGCGGGGGGCGcg-CGAC-CCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.