miRNA display CGI


Results 1 - 20 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 183244 0.66 0.834955
Target:  5'- -uGUGAGGGUCcucugucaauggGuGGCCACAGAGGGu -3'
miRNA:   3'- ucCGCUUCCGG------------CuCCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 181904 0.76 0.314681
Target:  5'- gGGGuCGcGGGGuuGAGGCCGCAgcGGGCu -3'
miRNA:   3'- -UCC-GC-UUCCggCUCCGGUGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 177651 0.71 0.576708
Target:  5'- uGGGUGuGGGuuGGcGGCCAUcuuGAGGGGCg -3'
miRNA:   3'- -UCCGCuUCCggCU-CCGGUG---UUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 177063 0.68 0.752485
Target:  5'- uGGUGAAGGCaaagaGGGGCCcacccGCAuuugagacccccggGAGGAUg -3'
miRNA:   3'- uCCGCUUCCGg----CUCCGG-----UGU--------------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 175855 0.67 0.809742
Target:  5'- -uGCGggGuGCCGggguuAGGCCcCAuGGGACu -3'
miRNA:   3'- ucCGCuuC-CGGC-----UCCGGuGUuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 175755 0.66 0.858561
Target:  5'- gGGGCGAcaccgaggguuaGGGUagGGGGCgCGCGcgggAGGGGCa -3'
miRNA:   3'- -UCCGCU------------UCCGg-CUCCG-GUGU----UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 175142 0.66 0.834955
Target:  5'- gAGGgGGAGGCauuGGCCGgugGAGGGCc -3'
miRNA:   3'- -UCCgCUUCCGgcuCCGGUgu-UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 174972 0.68 0.736245
Target:  5'- uAGGCGggGGCCaauggGGGGCCugu-GGGu- -3'
miRNA:   3'- -UCCGCuuCCGG-----CUCCGGuguuUCCug -5'
3602 3' -57.8 NC_001650.1 + 171340 0.67 0.809742
Target:  5'- cGGCccucugcGGUCGAGGCCggccaAUggGGGACg -3'
miRNA:   3'- uCCGcuu----CCGGCUCCGG-----UGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 171088 0.67 0.801014
Target:  5'- aGGGCccguccaaugGGAGGCCGGGGaCCcCu--GGACu -3'
miRNA:   3'- -UCCG----------CUUCCGGCUCC-GGuGuuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 170945 0.66 0.842215
Target:  5'- uGGC--AGGCCGAguuccccauuucuGGCCAauGGGGACu -3'
miRNA:   3'- uCCGcuUCCGGCU-------------CCGGUguUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 167337 0.72 0.508183
Target:  5'- gGGGgGAGuGGCUGGGGUguugUGCAAGGGGCg -3'
miRNA:   3'- -UCCgCUU-CCGGCUCCG----GUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 167308 0.69 0.706994
Target:  5'- gGGGCG-AGGCCGGGcuGCCGCccucccccGGGCc -3'
miRNA:   3'- -UCCGCuUCCGGCUC--CGGUGuuu-----CCUG- -5'
3602 3' -57.8 NC_001650.1 + 166742 0.73 0.45232
Target:  5'- cGGGgGGAGaGaacaCGggGGGCCACAAAGGGCg -3'
miRNA:   3'- -UCCgCUUC-Cg---GC--UCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 165747 0.71 0.606765
Target:  5'- gGGGCGGcucuuAGGCCuaggGGGGCCugu-GGGACa -3'
miRNA:   3'- -UCCGCU-----UCCGG----CUCCGGuguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 165468 0.72 0.546994
Target:  5'- aAGGCGAGcGGcCCGAGGaaGCAcccGGGGCg -3'
miRNA:   3'- -UCCGCUU-CC-GGCUCCggUGUu--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 165123 0.72 0.527456
Target:  5'- uGGCGgcGGCCGcggugGGGCC-CGGGGGGu -3'
miRNA:   3'- uCCGCuuCCGGC-----UCCGGuGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 164777 0.66 0.843012
Target:  5'- gAGGCGAggGGGCCc-GGCCGguuGGGAa -3'
miRNA:   3'- -UCCGCU--UCCGGcuCCGGUguuUCCUg -5'
3602 3' -57.8 NC_001650.1 + 163271 0.68 0.771207
Target:  5'- gGGGCGAGGcgguagccugcugaGCgGuGGCCAUGGuGGACa -3'
miRNA:   3'- -UCCGCUUC--------------CGgCuCCGGUGUUuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 160207 0.66 0.850883
Target:  5'- gGGGuUGAGGaGCaaaGAGGCCACuAGGuGGCc -3'
miRNA:   3'- -UCC-GCUUC-CGg--CUCCGGUGuUUC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.