miRNA display CGI


Results 1 - 20 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 24008 1.09 0.002247
Target:  5'- uAGGCGAAGGCCGAGGCCACAAAGGACu -3'
miRNA:   3'- -UCCGCUUCCGGCUCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 85453 0.73 0.489214
Target:  5'- gAGGcCGAAGGCCaGGGGgCugAGGGGGu -3'
miRNA:   3'- -UCC-GCUUCCGG-CUCCgGugUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 116461 0.73 0.498658
Target:  5'- cGGGCGGGuGuCCGAGGCCAagaccAGGGCg -3'
miRNA:   3'- -UCCGCUUcC-GGCUCCGGUguu--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 49860 0.66 0.873317
Target:  5'- gGGGC-AAGGCCcacccccAGGCCugGuuguagAGGGGCg -3'
miRNA:   3'- -UCCGcUUCCGGc------UCCGGugU------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 73705 0.78 0.249717
Target:  5'- uGGCGAGcuggccguGGCUGAGGCC-CGGGGGGCc -3'
miRNA:   3'- uCCGCUU--------CCGGCUCCGGuGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 61079 0.77 0.287263
Target:  5'- gAGGUGcuGGCCucGGCCACcGAGGACu -3'
miRNA:   3'- -UCCGCuuCCGGcuCCGGUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 98038 0.76 0.326918
Target:  5'- cGGGCGAGGGCgaugcuucuggggaCGAgGGUCACGAAGGGg -3'
miRNA:   3'- -UCCGCUUCCG--------------GCU-CCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 61344 0.75 0.38341
Target:  5'- cGGCGggGGaCCcgGGGGCgGCGGGGGAg -3'
miRNA:   3'- uCCGCuuCC-GG--CUCCGgUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 23788 0.74 0.434451
Target:  5'- uGGCuauGggGGCCaGGGCCAgGcuGAGGACg -3'
miRNA:   3'- uCCG---CuuCCGGcUCCGGUgU--UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 80327 0.73 0.4669
Target:  5'- cGGGCGAGauagcGGUCGuGGCCACAuagaucuugagguAGGGCg -3'
miRNA:   3'- -UCCGCUU-----CCGGCuCCGGUGUu------------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 155048 0.73 0.449614
Target:  5'- aAGGCcuguGGGCCGAGGCUauauauaaagccccGCGGGGGAa -3'
miRNA:   3'- -UCCGcu--UCCGGCUCCGG--------------UGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 125763 0.74 0.408433
Target:  5'- cGGGCGgcGGCCGuGcGCCG--AGGGACg -3'
miRNA:   3'- -UCCGCuuCCGGCuC-CGGUguUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 50543 0.89 0.047247
Target:  5'- gGGGCucgaGGAGGCCGGGGCCGgGAGGGACg -3'
miRNA:   3'- -UCCG----CUUCCGGCUCCGGUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 111403 0.73 0.45232
Target:  5'- gGGGCGcGGGCCGccugagccgccuGGGCCugAcuGGGACc -3'
miRNA:   3'- -UCCGCuUCCGGC------------UCCGGugUu-UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 136379 0.87 0.065031
Target:  5'- cGGGUcGGGGUCGAGGCCGCGGGGGGCg -3'
miRNA:   3'- -UCCGcUUCCGGCUCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 76997 0.75 0.391638
Target:  5'- gAGG-GAGGcGCaCGuGGCCAUAGAGGGCa -3'
miRNA:   3'- -UCCgCUUC-CG-GCuCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 94754 0.73 0.461404
Target:  5'- aGGGUGGacagggAGGCCGAGGagGCGGAGGGg -3'
miRNA:   3'- -UCCGCU------UCCGGCUCCggUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 69860 0.73 0.489214
Target:  5'- aGGGCGAaagagAGGUCGAugaggcGGCgGCGAAGGAa -3'
miRNA:   3'- -UCCGCU-----UCCGGCU------CCGgUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 56686 0.79 0.227002
Target:  5'- uGGGCGccagcuGGGCUGGGGUCAgCGAGGGGCg -3'
miRNA:   3'- -UCCGCu-----UCCGGCUCCGGU-GUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 59868 0.77 0.300731
Target:  5'- cAGGC---GGCCGAGGCgucCGCGAAGGACc -3'
miRNA:   3'- -UCCGcuuCCGGCUCCG---GUGUUUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.