miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 5' -66.6 NC_001650.1 + 184143 0.68 0.386866
Target:  5'- -aGCCCCuUUUCGGGgGGGUUuguggggCUGCCu -3'
miRNA:   3'- cgCGGGG-GGAGCCCgCCCAGa------GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 170364 0.66 0.528646
Target:  5'- cCGUCCCCgUCacgGGGCGucccgCUCUGCCa -3'
miRNA:   3'- cGCGGGGGgAG---CCCGCcca--GAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 167325 0.68 0.394505
Target:  5'- cCGCCCuCCCcCGGGCccccauuggucGGUCUCCcCCg -3'
miRNA:   3'- cGCGGG-GGGaGCCCGc----------CCAGAGGcGG- -5'
3602 5' -66.6 NC_001650.1 + 164652 0.69 0.363813
Target:  5'- -aGCCCCUCcCGGGUgagccggGGGUCUCUGgUa -3'
miRNA:   3'- cgCGGGGGGaGCCCG-------CCCAGAGGCgG- -5'
3602 5' -66.6 NC_001650.1 + 158352 0.79 0.076046
Target:  5'- gGCGCCCCCCUCGgcGGCcgGGGUCagCGCg -3'
miRNA:   3'- -CGCGGGGGGAGC--CCG--CCCAGagGCGg -5'
3602 5' -66.6 NC_001650.1 + 155995 0.7 0.30306
Target:  5'- -gGUCCCCCgggcggCGGGUGGGgg-CgGCCg -3'
miRNA:   3'- cgCGGGGGGa-----GCCCGCCCagaGgCGG- -5'
3602 5' -66.6 NC_001650.1 + 145912 0.66 0.537645
Target:  5'- uGUGCCaguuCUacguggCGGGCGGGgagcUCUCCuGCCa -3'
miRNA:   3'- -CGCGGg---GGga----GCCCGCCC----AGAGG-CGG- -5'
3602 5' -66.6 NC_001650.1 + 142949 0.71 0.278409
Target:  5'- cCGCCUCCgcaaaCUcCGGGCGccuGGUCUCgGCCg -3'
miRNA:   3'- cGCGGGGG-----GA-GCCCGC---CCAGAGgCGG- -5'
3602 5' -66.6 NC_001650.1 + 141929 0.66 0.519702
Target:  5'- -aGCCUUCCUCGcGGCaGGGgggcaaaccccCUCgGCCg -3'
miRNA:   3'- cgCGGGGGGAGC-CCG-CCCa----------GAGgCGG- -5'
3602 5' -66.6 NC_001650.1 + 138818 0.66 0.546696
Target:  5'- gGUcCCCCUCUCGGuugcGCGGGUCaacucccaUCC-CCa -3'
miRNA:   3'- -CGcGGGGGGAGCC----CGCCCAG--------AGGcGG- -5'
3602 5' -66.6 NC_001650.1 + 136827 0.68 0.410073
Target:  5'- gGCGCCCcgacgCCCcCGGGCGGugggcuggguuuGUCUUCggGCCu -3'
miRNA:   3'- -CGCGGG-----GGGaGCCCGCC------------CAGAGG--CGG- -5'
3602 5' -66.6 NC_001650.1 + 134883 0.66 0.519702
Target:  5'- cCGCCCCCCgagaGGC-GGUCaggUCGCCc -3'
miRNA:   3'- cGCGGGGGGagc-CCGcCCAGa--GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 134349 0.67 0.484567
Target:  5'- uCGCCCCCUuggUCuGGuCGGGUCUCagGUUg -3'
miRNA:   3'- cGCGGGGGG---AGcCC-GCCCAGAGg-CGG- -5'
3602 5' -66.6 NC_001650.1 + 134333 0.73 0.209287
Target:  5'- gGCGCCCCCCgCGGGCc---CUCCGUg -3'
miRNA:   3'- -CGCGGGGGGaGCCCGcccaGAGGCGg -5'
3602 5' -66.6 NC_001650.1 + 134122 0.66 0.527749
Target:  5'- gGCGCCCCCagcuguaCUCuGGGCGccgcGGUCccaggggCgGCCu -3'
miRNA:   3'- -CGCGGGGG-------GAG-CCCGC----CCAGa------GgCGG- -5'
3602 5' -66.6 NC_001650.1 + 133921 0.67 0.483703
Target:  5'- gGCGCCCCCCgcucccaguuuUCagaggcagccgcaGGuGCGGGcCUCgcuCGCCc -3'
miRNA:   3'- -CGCGGGGGG-----------AG-------------CC-CGCCCaGAG---GCGG- -5'
3602 5' -66.6 NC_001650.1 + 133498 0.7 0.316002
Target:  5'- gGCaGCCCCCUccccuucucUCGGcGCGGGggCUUCgGCCu -3'
miRNA:   3'- -CG-CGGGGGG---------AGCC-CGCCCa-GAGG-CGG- -5'
3602 5' -66.6 NC_001650.1 + 133456 0.7 0.296744
Target:  5'- uGCgGCCCCCUguuguuuuuucUCGGGCGGcccgCUCCcaGCCc -3'
miRNA:   3'- -CG-CGGGGGG-----------AGCCCGCCca--GAGG--CGG- -5'
3602 5' -66.6 NC_001650.1 + 133142 0.73 0.191208
Target:  5'- cGCGCCgcggggggaCCCUCGGGCGGcuguaGUCUCgcggagcgggCGCCa -3'
miRNA:   3'- -CGCGGg--------GGGAGCCCGCC-----CAGAG----------GCGG- -5'
3602 5' -66.6 NC_001650.1 + 132213 0.66 0.502
Target:  5'- gGUGCCUgCUgc--GCGGcGUCUCCGCCc -3'
miRNA:   3'- -CGCGGGgGGagccCGCC-CAGAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.