miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3603 5' -60.7 NC_001650.1 + 158463 0.66 0.774166
Target:  5'- cAGGc-CUCCACgGCCGCcagcccccuggUGAGGCa-- -3'
miRNA:   3'- -UCCauGAGGUGgCGGCG-----------ACUCCGccu -5'
3603 5' -60.7 NC_001650.1 + 21525 0.66 0.77327
Target:  5'- gGGGcUACUgCugggaggGCCGCgGCUGcGGUGGAc -3'
miRNA:   3'- -UCC-AUGAgG-------UGGCGgCGACuCCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 36652 0.66 0.765149
Target:  5'- aGGGUcuuCUCCugC-CUGCUGgacguggccGGGCGGGa -3'
miRNA:   3'- -UCCAu--GAGGugGcGGCGAC---------UCCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 162862 0.66 0.756023
Target:  5'- aGGGUAUUUCuCCGCCauuGCUG-GGCuuGGAg -3'
miRNA:   3'- -UCCAUGAGGuGGCGG---CGACuCCG--CCU- -5'
3603 5' -60.7 NC_001650.1 + 23958 0.66 0.756023
Target:  5'- cGGGU-CUCCGCCccccgcgcGCCGC-GAGGacgcgcaGGAg -3'
miRNA:   3'- -UCCAuGAGGUGG--------CGGCGaCUCCg------CCU- -5'
3603 5' -60.7 NC_001650.1 + 90402 0.66 0.746797
Target:  5'- ---cGCUuccCCACCGCCGCcagGGGGCGc- -3'
miRNA:   3'- uccaUGA---GGUGGCGGCGa--CUCCGCcu -5'
3603 5' -60.7 NC_001650.1 + 91141 0.66 0.737478
Target:  5'- uGGGUcCUCC-CgGCCGCgGGGGCugcugcGGAu -3'
miRNA:   3'- -UCCAuGAGGuGgCGGCGaCUCCG------CCU- -5'
3603 5' -60.7 NC_001650.1 + 111504 0.66 0.728075
Target:  5'- uGGUGauccCCGCCGCCGCgcgcacGGgGGAg -3'
miRNA:   3'- uCCAUga--GGUGGCGGCGacu---CCgCCU- -5'
3603 5' -60.7 NC_001650.1 + 57958 0.67 0.718596
Target:  5'- cGGGcUACUCCcCCGUCGCccaccccgcGAGGcCGGGc -3'
miRNA:   3'- -UCC-AUGAGGuGGCGGCGa--------CUCC-GCCU- -5'
3603 5' -60.7 NC_001650.1 + 109067 0.67 0.718596
Target:  5'- --cUACUCCAuCUGCCGCUccGuGCGGAg -3'
miRNA:   3'- uccAUGAGGU-GGCGGCGAcuC-CGCCU- -5'
3603 5' -60.7 NC_001650.1 + 132863 0.67 0.689783
Target:  5'- -uGUACUCCGCCGCCacuCUGGacuuggggauGGgGGAg -3'
miRNA:   3'- ucCAUGAGGUGGCGGc--GACU----------CCgCCU- -5'
3603 5' -60.7 NC_001650.1 + 35319 0.67 0.68008
Target:  5'- uGGUAUauUCCuugguCgGCCGCgagGGGGCGGc -3'
miRNA:   3'- uCCAUG--AGGu----GgCGGCGa--CUCCGCCu -5'
3603 5' -60.7 NC_001650.1 + 138154 0.67 0.68008
Target:  5'- aAGGU-CUUUACC-CUGCUGAaGGCGGc -3'
miRNA:   3'- -UCCAuGAGGUGGcGGCGACU-CCGCCu -5'
3603 5' -60.7 NC_001650.1 + 108147 0.68 0.660573
Target:  5'- uGGcACuUCCG-CGUgGCUGGGGCGGGu -3'
miRNA:   3'- uCCaUG-AGGUgGCGgCGACUCCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 82989 0.68 0.660573
Target:  5'- gAGGgACcUCAUCGCCaggggGCUgGAGGCGGAg -3'
miRNA:   3'- -UCCaUGaGGUGGCGG-----CGA-CUCCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 101842 0.68 0.660573
Target:  5'- cAGGUGCUCCagcaggcgACCGCCuauccaGCcuccgUGcAGGCGGGc -3'
miRNA:   3'- -UCCAUGAGG--------UGGCGG------CG-----AC-UCCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 118648 0.68 0.659595
Target:  5'- cAGGgaccuCUCC-CCGCUGCUGugcagcaaguccgGGGUGGGc -3'
miRNA:   3'- -UCCau---GAGGuGGCGGCGAC-------------UCCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 163609 0.68 0.657638
Target:  5'- ----cCUCCGCCGCCGCUGuuuggaaaauuagcAGGCucGGGg -3'
miRNA:   3'- uccauGAGGUGGCGGCGAC--------------UCCG--CCU- -5'
3603 5' -60.7 NC_001650.1 + 182273 0.68 0.650784
Target:  5'- cGGUugUUgGCCGCUcgGCUGGuuGGUGGGu -3'
miRNA:   3'- uCCAugAGgUGGCGG--CGACU--CCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 15566 0.68 0.650784
Target:  5'- cGGUugUUgGCCGCUcgGCUGGuuGGUGGGu -3'
miRNA:   3'- uCCAugAGgUGGCGG--CGACU--CCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.