miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3604 3' -51.7 NC_001650.1 + 22737 0.66 0.994572
Target:  5'- cGGUGcUGUCCACGU--GCCagaGCAGGCu -3'
miRNA:   3'- -CCACaAUAGGUGCGgcCGG---UGUUUGu -5'
3604 3' -51.7 NC_001650.1 + 48862 0.66 0.994572
Target:  5'- -------aUCAUGCUGGCCAUGAACGg -3'
miRNA:   3'- ccacaauaGGUGCGGCCGGUGUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 111504 0.66 0.993723
Target:  5'- uGGUG--AUCCcCGCCG-CCGCGcGCAc -3'
miRNA:   3'- -CCACaaUAGGuGCGGCcGGUGUuUGU- -5'
3604 3' -51.7 NC_001650.1 + 23582 0.66 0.993723
Target:  5'- aGG-GUUcgaCCACcaccauagaguaGUCGGCCACGGGCAg -3'
miRNA:   3'- -CCaCAAua-GGUG------------CGGCCGGUGUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 164380 0.66 0.993633
Target:  5'- aGUGUgGUCCGCGCUGcagaacucgcccaGCCugAgaGACAg -3'
miRNA:   3'- cCACAaUAGGUGCGGC-------------CGGugU--UUGU- -5'
3604 3' -51.7 NC_001650.1 + 107162 0.66 0.992772
Target:  5'- uGGUGa---CCGCGCCccccagGGCCGCcaggGAACAg -3'
miRNA:   3'- -CCACaauaGGUGCGG------CCGGUG----UUUGU- -5'
3604 3' -51.7 NC_001650.1 + 60551 0.66 0.992772
Target:  5'- uGGUGUUGgggaacaugcCCGCGUCGcucaugaCCGCGAACAu -3'
miRNA:   3'- -CCACAAUa---------GGUGCGGCc------GGUGUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 57622 0.66 0.991708
Target:  5'- aGUGccGUgCGCGCCcgGGCCGCAGGgGg -3'
miRNA:   3'- cCACaaUAgGUGCGG--CCGGUGUUUgU- -5'
3604 3' -51.7 NC_001650.1 + 128900 0.66 0.991708
Target:  5'- ------cUCCACGUCGGCCAgGAuGCGc -3'
miRNA:   3'- ccacaauAGGUGCGGCCGGUgUU-UGU- -5'
3604 3' -51.7 NC_001650.1 + 80667 0.66 0.991708
Target:  5'- cGGgagGaagAUCCACGCCaacguGGCCGgGGGCu -3'
miRNA:   3'- -CCa--Caa-UAGGUGCGG-----CCGGUgUUUGu -5'
3604 3' -51.7 NC_001650.1 + 49177 0.67 0.989212
Target:  5'- uGGUGUccgagggCCgcGCGCUGGCCgaggGCGAGCu -3'
miRNA:   3'- -CCACAaua----GG--UGCGGCCGG----UGUUUGu -5'
3604 3' -51.7 NC_001650.1 + 128782 0.67 0.987762
Target:  5'- cGGUGggcccaGUCCGCGUuggcgaUGGCCGCcAGCu -3'
miRNA:   3'- -CCACaa----UAGGUGCG------GCCGGUGuUUGu -5'
3604 3' -51.7 NC_001650.1 + 157083 0.67 0.987762
Target:  5'- --aGUacUCCuuGCUGGCCACGGugGg -3'
miRNA:   3'- ccaCAauAGGugCGGCCGGUGUUugU- -5'
3604 3' -51.7 NC_001650.1 + 27454 0.67 0.984414
Target:  5'- cGGUGcUGUaCCugGCCcgGGuCCAgAAGCAg -3'
miRNA:   3'- -CCACaAUA-GGugCGG--CC-GGUgUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 120526 0.67 0.984414
Target:  5'- aGGUGcc-UCUggGCGCCGGCgACcuGCAg -3'
miRNA:   3'- -CCACaauAGG--UGCGGCCGgUGuuUGU- -5'
3604 3' -51.7 NC_001650.1 + 89491 0.67 0.982499
Target:  5'- aGGcGggGUUCGCGUgGGCCGCcaucGACAa -3'
miRNA:   3'- -CCaCaaUAGGUGCGgCCGGUGu---UUGU- -5'
3604 3' -51.7 NC_001650.1 + 58027 0.68 0.980413
Target:  5'- uGGUG---UCCAgGuuGGUCugGAGCAu -3'
miRNA:   3'- -CCACaauAGGUgCggCCGGugUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 82296 0.68 0.980413
Target:  5'- cGGUcaucGUUGggcaUCACGuuGGCCACcAGCAg -3'
miRNA:   3'- -CCA----CAAUa---GGUGCggCCGGUGuUUGU- -5'
3604 3' -51.7 NC_001650.1 + 68323 0.68 0.978146
Target:  5'- gGGUGgaguUCCA-GuuGGCCACGGAg- -3'
miRNA:   3'- -CCACaau-AGGUgCggCCGGUGUUUgu -5'
3604 3' -51.7 NC_001650.1 + 128610 0.68 0.97304
Target:  5'- aGGUGgUGUCCAUGUgccccgCGGCCAgGGAg- -3'
miRNA:   3'- -CCACaAUAGGUGCG------GCCGGUgUUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.