miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3606 3' -63.3 NC_001650.1 + 32166 0.66 0.624722
Target:  5'- --gGGGUCGggGGCGGGCCuCGCgucGUCc -3'
miRNA:   3'- ccaUCCGGUa-CCGCCCGG-GCGac-CGG- -5'
3606 3' -63.3 NC_001650.1 + 130012 0.66 0.634346
Target:  5'- cGGgacgAGGCC---GCGGGCCUcaagGGCCa -3'
miRNA:   3'- -CCa---UCCGGuacCGCCCGGGcga-CCGG- -5'
3606 3' -63.3 NC_001650.1 + 49177 0.66 0.634346
Target:  5'- uGGUguccgaGGGCCGcgcgcUGGCcgaGGGCgaGCUGcGCCu -3'
miRNA:   3'- -CCA------UCCGGU-----ACCG---CCCGggCGAC-CGG- -5'
3606 3' -63.3 NC_001650.1 + 169808 0.66 0.624722
Target:  5'- aGGgAGGCCAuauUGGauucuGGCCC-CUGGCa -3'
miRNA:   3'- -CCaUCCGGU---ACCgc---CCGGGcGACCGg -5'
3606 3' -63.3 NC_001650.1 + 171477 0.66 0.611259
Target:  5'- cGGUAGGCCucugcaaauccaGGCcgGGGCUCGagggguaGGCCu -3'
miRNA:   3'- -CCAUCCGGua----------CCG--CCCGGGCga-----CCGG- -5'
3606 3' -63.3 NC_001650.1 + 58372 0.66 0.615103
Target:  5'- aGGUgaaaugGGGCUcgGGCaGGCUCuCgggGGCCg -3'
miRNA:   3'- -CCA------UCCGGuaCCGcCCGGGcGa--CCGG- -5'
3606 3' -63.3 NC_001650.1 + 73420 0.66 0.624722
Target:  5'- gGGgcGGCCcagGGCcagcacaacGGGCCCGac-GCCa -3'
miRNA:   3'- -CCauCCGGua-CCG---------CCCGGGCgacCGG- -5'
3606 3' -63.3 NC_001650.1 + 124211 0.66 0.624722
Target:  5'- aGUccGCCAaagaGGUGGGCCagaaGCUGGUg -3'
miRNA:   3'- cCAucCGGUa---CCGCCCGGg---CGACCGg -5'
3606 3' -63.3 NC_001650.1 + 33805 0.66 0.617988
Target:  5'- --cAGGCCuGUGGUGGGCUucaaguuuaucaaUgggagcgaacuguuuGCUGGCCa -3'
miRNA:   3'- ccaUCCGG-UACCGCCCGG-------------G---------------CGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 156217 0.66 0.66318
Target:  5'- cGGgcgagGGGCaCGUGGUggucacgcagggGGGCUCGgUGGUg -3'
miRNA:   3'- -CCa----UCCG-GUACCG------------CCCGGGCgACCGg -5'
3606 3' -63.3 NC_001650.1 + 156803 0.66 0.605496
Target:  5'- --cAGGCCAggacgUGGcCGGGCaCCGggcguCUGGCa -3'
miRNA:   3'- ccaUCCGGU-----ACC-GCCCG-GGC-----GACCGg -5'
3606 3' -63.3 NC_001650.1 + 142401 0.66 0.605496
Target:  5'- cGGUGGGagagGGgggucucuaCGGGCCCGagggcaucaUGGCCg -3'
miRNA:   3'- -CCAUCCgguaCC---------GCCCGGGCg--------ACCGG- -5'
3606 3' -63.3 NC_001650.1 + 50744 0.66 0.634346
Target:  5'- --aGGGCCGcGGUGGGCgCCGCca-CCa -3'
miRNA:   3'- ccaUCCGGUaCCGCCCG-GGCGaccGG- -5'
3606 3' -63.3 NC_001650.1 + 3101 0.66 0.624722
Target:  5'- aGGgAGGCCAuauUGGauucuGGCCC-CUGGCa -3'
miRNA:   3'- -CCaUCCGGU---ACCgc---CCGGGcGACCGg -5'
3606 3' -63.3 NC_001650.1 + 80474 0.66 0.604536
Target:  5'- uGGgggAGGCCGUcGCGGGCagggaguucaccuCCGUgGGCa -3'
miRNA:   3'- -CCa--UCCGGUAcCGCCCG-------------GGCGaCCGg -5'
3606 3' -63.3 NC_001650.1 + 117838 0.66 0.615103
Target:  5'- --cAGGCaCGcgGGCaGGCacaCGUUGGCCa -3'
miRNA:   3'- ccaUCCG-GUa-CCGcCCGg--GCGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 4770 0.66 0.611259
Target:  5'- cGGUAGGCCucugcaaauccaGGCcgGGGCUCGagggguaGGCCu -3'
miRNA:   3'- -CCAUCCGGua----------CCG--CCCGGGCga-----CCGG- -5'
3606 3' -63.3 NC_001650.1 + 163295 0.66 0.615103
Target:  5'- cGGU-GGCCAUGGUGGacaCCCuccucacgGC-GGCCc -3'
miRNA:   3'- -CCAuCCGGUACCGCCc--GGG--------CGaCCGG- -5'
3606 3' -63.3 NC_001650.1 + 118952 0.66 0.615103
Target:  5'- cGUAGGCCcUGGUgucuacGGGCgCGCgccuGCCc -3'
miRNA:   3'- cCAUCCGGuACCG------CCCGgGCGac--CGG- -5'
3606 3' -63.3 NC_001650.1 + 63969 0.66 0.615103
Target:  5'- uGGUGGGCUAUuggggGGCgaGGGCuuGCaacGCCc -3'
miRNA:   3'- -CCAUCCGGUA-----CCG--CCCGggCGac-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.