miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3606 3' -63.3 NC_001650.1 + 25276 1.13 0.000448
Target:  5'- gGGUAGGCCAUGGCGGGCCCGCUGGCCa -3'
miRNA:   3'- -CCAUCCGGUACCGCCCGGGCGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 89208 0.81 0.076453
Target:  5'- aGGcGGGCCAgGGCGGGCggcggcaaCUGCUGGCCc -3'
miRNA:   3'- -CCaUCCGGUaCCGCCCG--------GGCGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 27534 0.79 0.111084
Target:  5'- -aUGGGCCAcgGGCuGGCCUGCcUGGCCg -3'
miRNA:   3'- ccAUCCGGUa-CCGcCCGGGCG-ACCGG- -5'
3606 3' -63.3 NC_001650.1 + 35275 0.78 0.125592
Target:  5'- gGGUGGGCgG-GGCGGGCCggggacgggCGCgGGCCa -3'
miRNA:   3'- -CCAUCCGgUaCCGCCCGG---------GCGaCCGG- -5'
3606 3' -63.3 NC_001650.1 + 25063 0.78 0.131873
Target:  5'- cGU-GGCCA--GCGGGCCCGCcaUGGCCu -3'
miRNA:   3'- cCAuCCGGUacCGCCCGGGCG--ACCGG- -5'
3606 3' -63.3 NC_001650.1 + 145746 0.77 0.159989
Target:  5'- --aGGGCCAUGGCGGGCagguCCGCcgGGUUc -3'
miRNA:   3'- ccaUCCGGUACCGCCCG----GGCGa-CCGG- -5'
3606 3' -63.3 NC_001650.1 + 182978 0.76 0.163862
Target:  5'- aGGUGGGCCAccuuuaaggugGGCGGGUaaGCgggUGGCCa -3'
miRNA:   3'- -CCAUCCGGUa----------CCGCCCGggCG---ACCGG- -5'
3606 3' -63.3 NC_001650.1 + 16271 0.76 0.163862
Target:  5'- aGGUGGGCCAccuuuaaggugGGCGGGUaaGCgggUGGCCa -3'
miRNA:   3'- -CCAUCCGGUa----------CCGCCCGggCG---ACCGG- -5'
3606 3' -63.3 NC_001650.1 + 73708 0.76 0.184079
Target:  5'- aGGUGgcgagcuGGCCGUGGCuGaGGCCCGgggGGCCg -3'
miRNA:   3'- -CCAU-------CCGGUACCG-C-CCGGGCga-CCGG- -5'
3606 3' -63.3 NC_001650.1 + 131912 0.75 0.202658
Target:  5'- gGGcGGGCCAgGGCGGGCuucCUGCUgugGGCCc -3'
miRNA:   3'- -CCaUCCGGUaCCGCCCG---GGCGA---CCGG- -5'
3606 3' -63.3 NC_001650.1 + 22237 0.75 0.20743
Target:  5'- gGGUGGGCCAgggccgGGaCGGGCaCGCgGGCg -3'
miRNA:   3'- -CCAUCCGGUa-----CC-GCCCGgGCGaCCGg -5'
3606 3' -63.3 NC_001650.1 + 156485 0.75 0.20743
Target:  5'- cGGcAGGCCcUGGU-GGCCCGCgGGCUg -3'
miRNA:   3'- -CCaUCCGGuACCGcCCGGGCGaCCGG- -5'
3606 3' -63.3 NC_001650.1 + 155899 0.74 0.243607
Target:  5'- aGGUGu-CCGUGGUGGGCCCcgaggacCUGGCCu -3'
miRNA:   3'- -CCAUccGGUACCGCCCGGGc------GACCGG- -5'
3606 3' -63.3 NC_001650.1 + 132201 0.74 0.249184
Target:  5'- aGGU-GGCCGUGG-GGuGCCUGCUGcGCg -3'
miRNA:   3'- -CCAuCCGGUACCgCC-CGGGCGAC-CGg -5'
3606 3' -63.3 NC_001650.1 + 19039 0.74 0.249184
Target:  5'- --cAGGCCugaAUGGcCGaGGCCgUGCUGGCCa -3'
miRNA:   3'- ccaUCCGG---UACC-GC-CCGG-GCGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 48168 0.74 0.249184
Target:  5'- -cUGGGCgGUGGUGGggaGCCUGCUGGUg -3'
miRNA:   3'- ccAUCCGgUACCGCC---CGGGCGACCGg -5'
3606 3' -63.3 NC_001650.1 + 182250 0.73 0.266548
Target:  5'- aGGUGGGCUGUugcucuGUGGGCCgguUGUUGGCCg -3'
miRNA:   3'- -CCAUCCGGUAc-----CGCCCGG---GCGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 15543 0.73 0.266548
Target:  5'- aGGUGGGCUGUugcucuGUGGGCCgguUGUUGGCCg -3'
miRNA:   3'- -CCAUCCGGUAc-----CGCCCGG---GCGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 85026 0.72 0.289297
Target:  5'- aGGUAGuacacguacacguaGCgCAUGGCGGGCa-GCUuGGCCa -3'
miRNA:   3'- -CCAUC--------------CG-GUACCGCCCGggCGA-CCGG- -5'
3606 3' -63.3 NC_001650.1 + 149100 0.72 0.30419
Target:  5'- --gGGGau-UGGUGGG-CCGCUGGCCa -3'
miRNA:   3'- ccaUCCgguACCGCCCgGGCGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.