miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3606 3' -63.3 NC_001650.1 + 70924 0.7 0.415481
Target:  5'- uGGUGacGGCCGUcagcuacgGGCGGGCCa--UGGUCg -3'
miRNA:   3'- -CCAU--CCGGUA--------CCGCCCGGgcgACCGG- -5'
3606 3' -63.3 NC_001650.1 + 64986 0.71 0.352365
Target:  5'- ---uGGCCGUGGCcGGCCuggaggaCGCgGGCCa -3'
miRNA:   3'- ccauCCGGUACCGcCCGG-------GCGaCCGG- -5'
3606 3' -63.3 NC_001650.1 + 77795 0.71 0.352365
Target:  5'- --gAGGCCGcugccggagcugcUGGaC-GGCCUGCUGGCCu -3'
miRNA:   3'- ccaUCCGGU-------------ACC-GcCCGGGCGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 50544 0.71 0.357544
Target:  5'- aGGU-GGCCuuccUGGCGGuggaguGCCCGCgcaacccggucagGGCCg -3'
miRNA:   3'- -CCAuCCGGu---ACCGCC------CGGGCGa------------CCGG- -5'
3606 3' -63.3 NC_001650.1 + 26461 0.71 0.368061
Target:  5'- --cAGGCCAgcGUGGGCCCGUgcGGCUu -3'
miRNA:   3'- ccaUCCGGUacCGCCCGGGCGa-CCGG- -5'
3606 3' -63.3 NC_001650.1 + 66853 0.71 0.375702
Target:  5'- -aUGGGCU-UGGCGGGgCCGCgggagGcGCCg -3'
miRNA:   3'- ccAUCCGGuACCGCCCgGGCGa----C-CGG- -5'
3606 3' -63.3 NC_001650.1 + 106850 0.7 0.38345
Target:  5'- gGGUGGGCgCuggGGuCGGGCCCGg-GGUg -3'
miRNA:   3'- -CCAUCCG-Gua-CC-GCCCGGGCgaCCGg -5'
3606 3' -63.3 NC_001650.1 + 129946 0.7 0.386579
Target:  5'- --gAGGCUGUGGCGGGCaCGCcccuggaggcgcccgUGGCg -3'
miRNA:   3'- ccaUCCGGUACCGCCCGgGCG---------------ACCGg -5'
3606 3' -63.3 NC_001650.1 + 25455 0.7 0.40732
Target:  5'- aGGU-GGUUGUGGUGGGgCCGCUGcucuCCa -3'
miRNA:   3'- -CCAuCCGGUACCGCCCgGGCGACc---GG- -5'
3606 3' -63.3 NC_001650.1 + 89480 0.71 0.338577
Target:  5'- -cUGGGCCGccgaGGCgGGGUUCGCgugGGCCg -3'
miRNA:   3'- ccAUCCGGUa---CCG-CCCGGGCGa--CCGG- -5'
3606 3' -63.3 NC_001650.1 + 46060 0.72 0.324492
Target:  5'- --aGGGCCuguaguuugaGUGaCGGGCCgGUUGGCCa -3'
miRNA:   3'- ccaUCCGG----------UACcGCCCGGgCGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 182250 0.73 0.266548
Target:  5'- aGGUGGGCUGUugcucuGUGGGCCgguUGUUGGCCg -3'
miRNA:   3'- -CCAUCCGGUAc-----CGCCCGG---GCGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 27534 0.79 0.111084
Target:  5'- -aUGGGCCAcgGGCuGGCCUGCcUGGCCg -3'
miRNA:   3'- ccAUCCGGUa-CCGcCCGGGCG-ACCGG- -5'
3606 3' -63.3 NC_001650.1 + 35275 0.78 0.125592
Target:  5'- gGGUGGGCgG-GGCGGGCCggggacgggCGCgGGCCa -3'
miRNA:   3'- -CCAUCCGgUaCCGCCCGG---------GCGaCCGG- -5'
3606 3' -63.3 NC_001650.1 + 25063 0.78 0.131873
Target:  5'- cGU-GGCCA--GCGGGCCCGCcaUGGCCu -3'
miRNA:   3'- cCAuCCGGUacCGCCCGGGCG--ACCGG- -5'
3606 3' -63.3 NC_001650.1 + 145746 0.77 0.159989
Target:  5'- --aGGGCCAUGGCGGGCagguCCGCcgGGUUc -3'
miRNA:   3'- ccaUCCGGUACCGCCCG----GGCGa-CCGG- -5'
3606 3' -63.3 NC_001650.1 + 131912 0.75 0.202658
Target:  5'- gGGcGGGCCAgGGCGGGCuucCUGCUgugGGCCc -3'
miRNA:   3'- -CCaUCCGGUaCCGCCCG---GGCGA---CCGG- -5'
3606 3' -63.3 NC_001650.1 + 48168 0.74 0.249184
Target:  5'- -cUGGGCgGUGGUGGggaGCCUGCUGGUg -3'
miRNA:   3'- ccAUCCGgUACCGCC---CGGGCGACCGg -5'
3606 3' -63.3 NC_001650.1 + 132201 0.74 0.249184
Target:  5'- aGGU-GGCCGUGG-GGuGCCUGCUGcGCg -3'
miRNA:   3'- -CCAuCCGGUACCgCC-CGGGCGAC-CGg -5'
3606 3' -63.3 NC_001650.1 + 15543 0.73 0.266548
Target:  5'- aGGUGGGCUGUugcucuGUGGGCCgguUGUUGGCCg -3'
miRNA:   3'- -CCAUCCGGUAc-----CGCCCGG---GCGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.