miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3606 3' -63.3 NC_001650.1 + 3094 0.66 0.634346
Target:  5'- gGGUGGGCUAgggGGUGGGCauaUggggugagguagGCUGuuGCCa -3'
miRNA:   3'- -CCAUCCGGUa--CCGCCCGg--G------------CGAC--CGG- -5'
3606 3' -63.3 NC_001650.1 + 3101 0.66 0.624722
Target:  5'- aGGgAGGCCAuauUGGauucuGGCCC-CUGGCa -3'
miRNA:   3'- -CCaUCCGGU---ACCgc---CCGGGcGACCGg -5'
3606 3' -63.3 NC_001650.1 + 3983 0.67 0.567301
Target:  5'- gGGUGGcGCCggGGCGGaGCUCGCccacGGaCa -3'
miRNA:   3'- -CCAUC-CGGuaCCGCC-CGGGCGa---CCgG- -5'
3606 3' -63.3 NC_001650.1 + 4216 0.67 0.58634
Target:  5'- uGGgGGGUCAUGGgGGGUCUuagGUaaUGGUCa -3'
miRNA:   3'- -CCaUCCGGUACCgCCCGGG---CG--ACCGG- -5'
3606 3' -63.3 NC_001650.1 + 4395 0.7 0.40732
Target:  5'- cGGUAGGaCCAUauaGGGCCCGUccaaugggaGGCCg -3'
miRNA:   3'- -CCAUCC-GGUAccgCCCGGGCGa--------CCGG- -5'
3606 3' -63.3 NC_001650.1 + 4770 0.66 0.611259
Target:  5'- cGGUAGGCCucugcaaauccaGGCcgGGGCUCGagggguaGGCCu -3'
miRNA:   3'- -CCAUCCGGua----------CCG--CCCGGGCga-----CCGG- -5'
3606 3' -63.3 NC_001650.1 + 5008 0.66 0.638195
Target:  5'- gGGUGGGCUccGGgGGGCCUccgugugucugauagGCggacgggGGUCc -3'
miRNA:   3'- -CCAUCCGGuaCCgCCCGGG---------------CGa------CCGG- -5'
3606 3' -63.3 NC_001650.1 + 5328 0.66 0.66318
Target:  5'- gGGgcGGCCAcgUGGUGGGgagGC-GGCCa -3'
miRNA:   3'- -CCauCCGGU--ACCGCCCgggCGaCCGG- -5'
3606 3' -63.3 NC_001650.1 + 8264 0.72 0.324492
Target:  5'- aGGcggGGGCCaAUGGgGGGCCUGUgGGUa -3'
miRNA:   3'- -CCa--UCCGG-UACCgCCCGGGCGaCCGg -5'
3606 3' -63.3 NC_001650.1 + 8817 0.66 0.605496
Target:  5'- uGGUGGGU-GUGG-GGGUCCuugggauugggGUUGGCCg -3'
miRNA:   3'- -CCAUCCGgUACCgCCCGGG-----------CGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 11634 0.69 0.4491
Target:  5'- gGGUGGGCUG-GGUGGcGCgCgGCgagagGGCCg -3'
miRNA:   3'- -CCAUCCGGUaCCGCC-CG-GgCGa----CCGG- -5'
3606 3' -63.3 NC_001650.1 + 11985 0.67 0.561619
Target:  5'- uGUGGGCacgggggucugagugCAUGG-GGGuCCCGgUGGUCg -3'
miRNA:   3'- cCAUCCG---------------GUACCgCCC-GGGCgACCGG- -5'
3606 3' -63.3 NC_001650.1 + 14215 0.67 0.595906
Target:  5'- aGGUGGGCg--GGCGGGCggGCaGGUg -3'
miRNA:   3'- -CCAUCCGguaCCGCCCGggCGaCCGg -5'
3606 3' -63.3 NC_001650.1 + 15277 0.7 0.388149
Target:  5'- cGGgcgGGGCCGUcccuucccccccaGC-GGCCCGCUGGCa -3'
miRNA:   3'- -CCa--UCCGGUAc------------CGcCCGGGCGACCGg -5'
3606 3' -63.3 NC_001650.1 + 15543 0.73 0.266548
Target:  5'- aGGUGGGCUGUugcucuGUGGGCCgguUGUUGGCCg -3'
miRNA:   3'- -CCAUCCGGUAc-----CGCCCGG---GCGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 16271 0.76 0.163862
Target:  5'- aGGUGGGCCAccuuuaaggugGGCGGGUaaGCgggUGGCCa -3'
miRNA:   3'- -CCAUCCGGUa----------CCGCCCGggCG---ACCGG- -5'
3606 3' -63.3 NC_001650.1 + 16746 0.67 0.585385
Target:  5'- gGGU-GGCCAucuUGGUGGGgUgGCcaucuugguggggUGGCCa -3'
miRNA:   3'- -CCAuCCGGU---ACCGCCCgGgCG-------------ACCGG- -5'
3606 3' -63.3 NC_001650.1 + 19039 0.74 0.249184
Target:  5'- --cAGGCCugaAUGGcCGaGGCCgUGCUGGCCa -3'
miRNA:   3'- ccaUCCGG---UACC-GC-CCGG-GCGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 22237 0.75 0.20743
Target:  5'- gGGUGGGCCAgggccgGGaCGGGCaCGCgGGCg -3'
miRNA:   3'- -CCAUCCGGUa-----CC-GCCCGgGCGaCCGg -5'
3606 3' -63.3 NC_001650.1 + 23375 0.69 0.4491
Target:  5'- uGG-AGGgCGcGGUGGGCCUGUaggaGGCCg -3'
miRNA:   3'- -CCaUCCgGUaCCGCCCGGGCGa---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.