miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 3' -60.2 NC_001650.1 + 182281 0.68 0.660103
Target:  5'- gGCCGCUcgGCUGGUuggugggugggugggUGGuuGUGGUGCAGa -3'
miRNA:   3'- -UGGUGG--UGGUCG---------------ACCggCGCCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 177944 0.69 0.6067
Target:  5'- uGCCACgC-CCGGCUGccGCUGCGGcgACGGc -3'
miRNA:   3'- -UGGUG-GuGGUCGAC--CGGCGCCa-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 167206 0.67 0.70515
Target:  5'- uAUCGCCucgGCCGGCaggGGgCGCuGUGCAGg -3'
miRNA:   3'- -UGGUGG---UGGUCGa--CCgGCGcCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 164800 0.71 0.481984
Target:  5'- aGCUcucaGCCGCCGGC-GGCCGCGa-GCAGa -3'
miRNA:   3'- -UGG----UGGUGGUCGaCCGGCGCcaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 157605 0.68 0.656154
Target:  5'- uACCAguuCCugCAGaaGGCCGCGGgccucaACGGc -3'
miRNA:   3'- -UGGU---GGugGUCgaCCGGCGCCa-----UGUC- -5'
3608 3' -60.2 NC_001650.1 + 155960 0.66 0.75177
Target:  5'- uGCCugC-CCGGCugcaccgagccccUGGCCGCGcUGCAc -3'
miRNA:   3'- -UGGugGuGGUCG-------------ACCGGCGCcAUGUc -5'
3608 3' -60.2 NC_001650.1 + 155587 0.66 0.780105
Target:  5'- cCCugCACCAGCccccuggaGGCCGCGuaGUugGc -3'
miRNA:   3'- uGGugGUGGUCGa-------CCGGCGC--CAugUc -5'
3608 3' -60.2 NC_001650.1 + 155101 0.68 0.616583
Target:  5'- cCCGCCACCguGGagacGGCCGUGGgguUGCGGg -3'
miRNA:   3'- uGGUGGUGG--UCga--CCGGCGCC---AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 143112 0.66 0.771083
Target:  5'- cGCCcgaGCgCGCCGGCUgcacgGGCCGgGGcgGCGGc -3'
miRNA:   3'- -UGG---UG-GUGGUCGA-----CCGGCgCCa-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 142907 0.69 0.55768
Target:  5'- cGCCGCCGCCcGCUcgccgcuuaucGGCCggcGCGGcgGCGGa -3'
miRNA:   3'- -UGGUGGUGGuCGA-----------CCGG---CGCCa-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 142682 0.66 0.743356
Target:  5'- uCCGCCGCCGcGCcGGCCgauaagcggcgaGCGGcgGCGGc -3'
miRNA:   3'- uGGUGGUGGU-CGaCCGG------------CGCCa-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 142619 0.67 0.70515
Target:  5'- cCCGCCgucaagcagcagGCCGGCggagggGGCUGCGGcugcUGCGGc -3'
miRNA:   3'- uGGUGG------------UGGUCGa-----CCGGCGCC----AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 142339 0.66 0.761946
Target:  5'- gACCuCCACCuucauGGC-GGCCGCGG-ACu- -3'
miRNA:   3'- -UGGuGGUGG-----UCGaCCGGCGCCaUGuc -5'
3608 3' -60.2 NC_001650.1 + 136287 0.67 0.685668
Target:  5'- cGCCcCCGCCuucauGGC-GGCCGCGGgGCuGg -3'
miRNA:   3'- -UGGuGGUGG-----UCGaCCGGCGCCaUGuC- -5'
3608 3' -60.2 NC_001650.1 + 134199 0.66 0.771083
Target:  5'- cACCACCACCAcacacGCcucccCCGCGG-GCAGa -3'
miRNA:   3'- -UGGUGGUGGU-----CGacc--GGCGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 134121 0.68 0.626477
Target:  5'- -gCGCCcCCAGCUGuacucugggcGCCGCGGUccCAGg -3'
miRNA:   3'- ugGUGGuGGUCGAC----------CGGCGCCAu-GUC- -5'
3608 3' -60.2 NC_001650.1 + 133296 0.7 0.547031
Target:  5'- cCCugCACCuGGCUcgccgccGGCCGCGGcUugGGa -3'
miRNA:   3'- uGGugGUGG-UCGA-------CCGGCGCC-AugUC- -5'
3608 3' -60.2 NC_001650.1 + 133082 0.71 0.446025
Target:  5'- aGCCGCgGCCGGC-GGCgaGCcaGGUGCAGg -3'
miRNA:   3'- -UGGUGgUGGUCGaCCGg-CG--CCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 132826 0.69 0.6067
Target:  5'- gGCCGCCugCAgGUUGGgggccagcgccuCCGCGGgcCAGu -3'
miRNA:   3'- -UGGUGGugGU-CGACC------------GGCGCCauGUC- -5'
3608 3' -60.2 NC_001650.1 + 132236 0.67 0.685668
Target:  5'- gGCCGCgGCCAGC-GcGUagaGCaGGUGCAGg -3'
miRNA:   3'- -UGGUGgUGGUCGaC-CGg--CG-CCAUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.