miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 3' -60.2 NC_001650.1 + 27120 1.07 0.001966
Target:  5'- uACCACCACCAGCUGGCCGCGGUACAGc -3'
miRNA:   3'- -UGGUGGUGGUCGACCGGCGCCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 72927 0.69 0.6067
Target:  5'- uGCC-CCACCAGCuUGGCCcucucGUGGgugGCGa -3'
miRNA:   3'- -UGGuGGUGGUCG-ACCGG-----CGCCa--UGUc -5'
3608 3' -60.2 NC_001650.1 + 28496 0.68 0.616583
Target:  5'- cACCACCGCCAGCacGCaccuGUaGUACAGg -3'
miRNA:   3'- -UGGUGGUGGUCGacCGg---CGcCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 73719 0.66 0.780105
Target:  5'- gAUCACCucgcaggugGCgAGCUGGCCGUGGc---- -3'
miRNA:   3'- -UGGUGG---------UGgUCGACCGGCGCCauguc -5'
3608 3' -60.2 NC_001650.1 + 51042 0.72 0.395035
Target:  5'- aGCuCGCCGCCcucgcGCgccggGGCCGCGGUGCc- -3'
miRNA:   3'- -UG-GUGGUGGu----CGa----CCGGCGCCAUGuc -5'
3608 3' -60.2 NC_001650.1 + 122512 0.72 0.427755
Target:  5'- cGCgGCgGCCAGCUGcucgcgcGCCGCGGgggcgUGCAGg -3'
miRNA:   3'- -UGgUGgUGGUCGAC-------CGGCGCC-----AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 121400 0.7 0.507032
Target:  5'- cACCGuCCGCCGGgcgcacccguagguCUGGUCGUGGaGCAGg -3'
miRNA:   3'- -UGGU-GGUGGUC--------------GACCGGCGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 48498 0.7 0.50985
Target:  5'- aACUugGCCACCAGCuUGGCCcuGUGGgcUAGg -3'
miRNA:   3'- -UGG--UGGUGGUCG-ACCGG--CGCCauGUC- -5'
3608 3' -60.2 NC_001650.1 + 122428 0.7 0.547996
Target:  5'- gGCCucgGgCACCAGCUcccucGCCGCGGUcCAGg -3'
miRNA:   3'- -UGG---UgGUGGUCGAc----CGGCGCCAuGUC- -5'
3608 3' -60.2 NC_001650.1 + 27974 0.69 0.6067
Target:  5'- -gCACauggGCguGUUGGCCGCGGUGCc- -3'
miRNA:   3'- ugGUGg---UGguCGACCGGCGCCAUGuc -5'
3608 3' -60.2 NC_001650.1 + 27072 0.69 0.577184
Target:  5'- cACCACCACCcccgcuauguGGCUcucGGCCcCGGgcaGCAGg -3'
miRNA:   3'- -UGGUGGUGG----------UCGA---CCGGcGCCa--UGUC- -5'
3608 3' -60.2 NC_001650.1 + 133296 0.7 0.547031
Target:  5'- cCCugCACCuGGCUcgccgccGGCCGCGGcUugGGa -3'
miRNA:   3'- uGGugGUGG-UCGA-------CCGGCGCC-AugUC- -5'
3608 3' -60.2 NC_001650.1 + 117313 0.74 0.311905
Target:  5'- uGCCcCCGCCc-CUGGCCGCGaaGUACAGg -3'
miRNA:   3'- -UGGuGGUGGucGACCGGCGC--CAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 51302 0.69 0.586994
Target:  5'- cCCAgCACCAGg-GGCUGaacaGGUACGGg -3'
miRNA:   3'- uGGUgGUGGUCgaCCGGCg---CCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 102457 0.73 0.347967
Target:  5'- cACCugCGCCGGCUGcGCCGUcuGGUgggagGCGGc -3'
miRNA:   3'- -UGGugGUGGUCGAC-CGGCG--CCA-----UGUC- -5'
3608 3' -60.2 NC_001650.1 + 61452 0.7 0.538367
Target:  5'- gGCCACCGCCcuCcacgUGGCCGgGG-ACGGg -3'
miRNA:   3'- -UGGUGGUGGucG----ACCGGCgCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 48364 0.69 0.586994
Target:  5'- cACCACCGCCcagaagauguaGGUgcagaUGGCCGCGGggguCAu -3'
miRNA:   3'- -UGGUGGUGG-----------UCG-----ACCGGCGCCau--GUc -5'
3608 3' -60.2 NC_001650.1 + 132826 0.69 0.6067
Target:  5'- gGCCGCCugCAgGUUGGgggccagcgccuCCGCGGgcCAGu -3'
miRNA:   3'- -UGGUGGugGU-CGACC------------GGCGCCauGUC- -5'
3608 3' -60.2 NC_001650.1 + 131841 0.73 0.363202
Target:  5'- gGCgGCCGCCAGCUcgGGCCG-GGUggccaGCAGc -3'
miRNA:   3'- -UGgUGGUGGUCGA--CCGGCgCCA-----UGUC- -5'
3608 3' -60.2 NC_001650.1 + 80970 0.71 0.446025
Target:  5'- cACCGgCACCAGCUccuucuccagGGCCGCgcaggaaagGGUGCAc -3'
miRNA:   3'- -UGGUgGUGGUCGA----------CCGGCG---------CCAUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.