miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3609 5' -55.6 NC_001650.1 + 49579 0.66 0.943519
Target:  5'- gGGUggUCUCUGUgauGGGGGCgga-GGUGg -3'
miRNA:   3'- -CCAaaAGGGACG---UCCCCGagaaCCGC- -5'
3609 5' -55.6 NC_001650.1 + 134504 0.66 0.938917
Target:  5'- gGGUagucuggCCCUG-GGGGGC-CUggcgGGCGg -3'
miRNA:   3'- -CCAaaa----GGGACgUCCCCGaGAa---CCGC- -5'
3609 5' -55.6 NC_001650.1 + 73781 0.66 0.938917
Target:  5'- -----gCCCUGCcccuGGGGCUgUUGGa- -3'
miRNA:   3'- ccaaaaGGGACGu---CCCCGAgAACCgc -5'
3609 5' -55.6 NC_001650.1 + 170784 0.66 0.929009
Target:  5'- uGGagaggCCCUGCcaggcauGGGGUUCUcauUGGCu -3'
miRNA:   3'- -CCaaaa-GGGACGu------CCCCGAGA---ACCGc -5'
3609 5' -55.6 NC_001650.1 + 4077 0.66 0.929009
Target:  5'- uGGagaggCCCUGCcaggcauGGGGUUCUcauUGGCu -3'
miRNA:   3'- -CCaaaa-GGGACGu------CCCCGAGA---ACCGc -5'
3609 5' -55.6 NC_001650.1 + 16746 0.66 0.929009
Target:  5'- gGGUggccaUCUUGguGGGGUggccaUCUUGGUGg -3'
miRNA:   3'- -CCAaaa--GGGACguCCCCG-----AGAACCGC- -5'
3609 5' -55.6 NC_001650.1 + 111062 0.66 0.923701
Target:  5'- uGGUacaggCCCUacccCAGGGGCUCcagcGGCGc -3'
miRNA:   3'- -CCAaaa--GGGAc---GUCCCCGAGaa--CCGC- -5'
3609 5' -55.6 NC_001650.1 + 121859 0.67 0.918158
Target:  5'- aGGUgcgaaagUUCUGCgAGGGGCUCaaccccGGCGa -3'
miRNA:   3'- -CCAaaa----GGGACG-UCCCCGAGaa----CCGC- -5'
3609 5' -55.6 NC_001650.1 + 127602 0.67 0.918158
Target:  5'- ----gUCCggGCucucGGGGCUCcUGGCGg -3'
miRNA:   3'- ccaaaAGGgaCGu---CCCCGAGaACCGC- -5'
3609 5' -55.6 NC_001650.1 + 88303 0.67 0.912379
Target:  5'- -----gCCCUGgAGGGGCgc--GGCGg -3'
miRNA:   3'- ccaaaaGGGACgUCCCCGagaaCCGC- -5'
3609 5' -55.6 NC_001650.1 + 183452 0.67 0.906367
Target:  5'- gGGUggccaUCUUGguGGGGUggcaUCUUGGUGg -3'
miRNA:   3'- -CCAaaa--GGGACguCCCCG----AGAACCGC- -5'
3609 5' -55.6 NC_001650.1 + 89169 0.67 0.900124
Target:  5'- aGGg--UCCUgUGCccGGGGCUCcggGGCGa -3'
miRNA:   3'- -CCaaaAGGG-ACGu-CCCCGAGaa-CCGC- -5'
3609 5' -55.6 NC_001650.1 + 144270 0.67 0.900124
Target:  5'- aGGUcgUCCUUGgAGuucuGGGCcgccaUCUUGGCGu -3'
miRNA:   3'- -CCAaaAGGGACgUC----CCCG-----AGAACCGC- -5'
3609 5' -55.6 NC_001650.1 + 93606 0.67 0.900124
Target:  5'- uGGUggUCCacaggGUGGGGGUgcccaUCUUGGCc -3'
miRNA:   3'- -CCAaaAGGga---CGUCCCCG-----AGAACCGc -5'
3609 5' -55.6 NC_001650.1 + 73983 0.67 0.900124
Target:  5'- ----cUgCCUGCAGGGGCUgUagaGGCc -3'
miRNA:   3'- ccaaaAgGGACGUCCCCGAgAa--CCGc -5'
3609 5' -55.6 NC_001650.1 + 62856 0.67 0.89365
Target:  5'- uGGgaugCCC--CAGGGGCUCggGGCu -3'
miRNA:   3'- -CCaaaaGGGacGUCCCCGAGaaCCGc -5'
3609 5' -55.6 NC_001650.1 + 52875 0.67 0.891665
Target:  5'- ----gUCCCUGCuGGGGCgauuccgCUcgaggcucacggucUGGCGc -3'
miRNA:   3'- ccaaaAGGGACGuCCCCGa------GA--------------ACCGC- -5'
3609 5' -55.6 NC_001650.1 + 156813 0.67 0.886952
Target:  5'- cGGUgauggCCUGCAGGGaGUUCUgcgccgagcugGGCGu -3'
miRNA:   3'- -CCAaaag-GGACGUCCC-CGAGAa----------CCGC- -5'
3609 5' -55.6 NC_001650.1 + 56818 0.68 0.880031
Target:  5'- gGGUca-CCCUGgAGGaGGCUUuuUUGGCu -3'
miRNA:   3'- -CCAaaaGGGACgUCC-CCGAG--AACCGc -5'
3609 5' -55.6 NC_001650.1 + 91142 0.68 0.880031
Target:  5'- gGGUccUCCCggccGCGGGGGCUgCU--GCGg -3'
miRNA:   3'- -CCAaaAGGGa---CGUCCCCGA-GAacCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.