miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3622 3' -51.8 NC_001650.1 + 180370 0.67 0.976561
Target:  5'- cUGGCCcUGAAAaaGGUgaggAUgGGGGGCu -3'
miRNA:   3'- uACUGGaAUUUUgaCCG----UAgCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 178907 0.67 0.975016
Target:  5'- -aGGCCggugGuuGCUGGCuUCcaucaaaucaugcagGGGGGCg -3'
miRNA:   3'- uaCUGGaa--UuuUGACCGuAG---------------CCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 174989 0.68 0.964835
Target:  5'- cAUGGCCU-----CUGGUuaauuaggCGGGGGCc -3'
miRNA:   3'- -UACUGGAauuuuGACCGua------GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 174440 0.66 0.992101
Target:  5'- -gGGCCUugggcaaUAAAGCccgUGGCccaaUGGGGGCu -3'
miRNA:   3'- uaCUGGA-------AUUUUG---ACCGua--GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 174328 0.66 0.992101
Target:  5'- -gGGCCUugggcaaUAAAGCccgUGGCccaaUGGGGGCu -3'
miRNA:   3'- uaCUGGA-------AUUUUG---ACCGua--GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 166120 0.68 0.971124
Target:  5'- uUGACCUUuacacaGGGGCccacaGGCcgCGGGuGGCa -3'
miRNA:   3'- uACUGGAA------UUUUGa----CCGuaGCCC-CCG- -5'
3622 3' -51.8 NC_001650.1 + 159659 0.69 0.94039
Target:  5'- --aGCCUUGAGuCUGGUcUgGGGGGUc -3'
miRNA:   3'- uacUGGAAUUUuGACCGuAgCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 159590 0.66 0.990575
Target:  5'- -aGACagcaccaucAACaUGGCggCGGGGGCg -3'
miRNA:   3'- uaCUGgaauu----UUG-ACCGuaGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 158685 0.67 0.976561
Target:  5'- cUGACCUcgggggccaggaUAAAGuggagcagcCUGaGC-UCGGGGGCg -3'
miRNA:   3'- uACUGGA------------AUUUU---------GAC-CGuAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 157513 0.69 0.949506
Target:  5'- -cGACCUg------GGCGagggCGGGGGCg -3'
miRNA:   3'- uaCUGGAauuuugaCCGUa---GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 156769 0.66 0.99188
Target:  5'- cUGGCCUUcagcuCUGGCugcuccucugccaaGUaCGGGGGUc -3'
miRNA:   3'- uACUGGAAuuuu-GACCG--------------UA-GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 156438 0.67 0.983253
Target:  5'- -gGGCCgUGcAGCUcgGGCGUgagccUGGGGGCa -3'
miRNA:   3'- uaCUGGaAUuUUGA--CCGUA-----GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 155873 0.68 0.971124
Target:  5'- cUGGCCUcgucccGGGACgGGC--UGGGGGCg -3'
miRNA:   3'- uACUGGAa-----UUUUGaCCGuaGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 155794 0.68 0.957643
Target:  5'- -cGGCCUccagGGGGCUGGUG-CaGGGGCu -3'
miRNA:   3'- uaCUGGAa---UUUUGACCGUaGcCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 154544 0.68 0.968089
Target:  5'- -aGACC-UGGAGCU-GC-UgGGGGGCg -3'
miRNA:   3'- uaCUGGaAUUUUGAcCGuAgCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 147632 0.68 0.968089
Target:  5'- --cGCUUUugggucGCUGGC-UCGGGGGUg -3'
miRNA:   3'- uacUGGAAuuu---UGACCGuAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 144085 0.75 0.718121
Target:  5'- gAUGACCUUAGAGgU-GCAUaUGGGGGUg -3'
miRNA:   3'- -UACUGGAAUUUUgAcCGUA-GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 142443 0.7 0.930274
Target:  5'- -aGGCCagcgagUAcacuAACUGGCAUaucuugcaGGGGGCg -3'
miRNA:   3'- uaCUGGa-----AUu---UUGACCGUAg-------CCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 141613 0.68 0.968089
Target:  5'- aAUGGCacagcucUGAAACcuucGGCcUCGGGGGCc -3'
miRNA:   3'- -UACUGga-----AUUUUGa---CCGuAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 134981 0.66 0.98897
Target:  5'- cGUGAggUCUgccucuggGGCAUCaGGGGGCg -3'
miRNA:   3'- -UACU--GGAauuuuga-CCGUAG-CCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.