miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
365 3' -59.7 AC_000011.1 + 23829 0.66 0.398563
Target:  5'- gCGCGGcugagcuccUCCACgcugagGGGCACcucGGUGCGGUc -3'
miRNA:   3'- -GCGCC---------AGGUG------CCCGUGcu-UCGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 12400 0.66 0.398563
Target:  5'- uGCGGUCCAgguUGGucuGCACGuuGGUGCuGUu -3'
miRNA:   3'- gCGCCAGGU---GCC---CGUGCu-UCGCGuCG- -5'
365 3' -59.7 AC_000011.1 + 3703 0.66 0.389522
Target:  5'- gCGCGGaauggCCAUGGGCGCc-GGCuacuaCGGCa -3'
miRNA:   3'- -GCGCCa----GGUGCCCGUGcuUCGc----GUCG- -5'
365 3' -59.7 AC_000011.1 + 26383 0.66 0.377094
Target:  5'- gGCGGg-CGCGGGCuacucuuuaagagUGAGcGCGCAGUa -3'
miRNA:   3'- gCGCCagGUGCCCGu------------GCUU-CGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 17116 0.66 0.362366
Target:  5'- gCGCGG-CCGCGGcgguacacucuccGCACc-AGgGCGGCa -3'
miRNA:   3'- -GCGCCaGGUGCC-------------CGUGcuUCgCGUCG- -5'
365 3' -59.7 AC_000011.1 + 6266 0.67 0.354731
Target:  5'- gGUGGUCagcucguCGGGCACGAuucugaccuGC-CAGCc -3'
miRNA:   3'- gCGCCAGgu-----GCCCGUGCUu--------CGcGUCG- -5'
365 3' -59.7 AC_000011.1 + 11547 0.67 0.354731
Target:  5'- aGCGGcCCuCGGGCuCGguGauauucaGCAGCg -3'
miRNA:   3'- gCGCCaGGuGCCCGuGCuuCg------CGUCG- -5'
365 3' -59.7 AC_000011.1 + 16422 0.67 0.338176
Target:  5'- gGCGG-CCGagcgccUGGGCgaguuugcuuACGGcaAGCGCAGCc -3'
miRNA:   3'- gCGCCaGGU------GCCCG----------UGCU--UCGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 10970 0.67 0.338176
Target:  5'- gGCGG-CCGCGgcggucguGGCugGAAGuUGCuGCu -3'
miRNA:   3'- gCGCCaGGUGC--------CCGugCUUC-GCGuCG- -5'
365 3' -59.7 AC_000011.1 + 21571 0.67 0.338176
Target:  5'- gGCGGUCgGgccaGuGCACGAAGCgugcaggaacauGCAGCa -3'
miRNA:   3'- gCGCCAGgUg---CcCGUGCUUCG------------CGUCG- -5'
365 3' -59.7 AC_000011.1 + 15757 0.67 0.330112
Target:  5'- gGC-GUCCACGGuGgagACG-GGCGCGGCg -3'
miRNA:   3'- gCGcCAGGUGCC-Cg--UGCuUCGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 8796 0.67 0.32219
Target:  5'- gCGCGcUCCACGGuggcCGCGAGGUcguuggagauGCGGCc -3'
miRNA:   3'- -GCGCcAGGUGCCc---GUGCUUCG----------CGUCG- -5'
365 3' -59.7 AC_000011.1 + 25025 0.67 0.314411
Target:  5'- uCGCGGaaggUCAgcGGCACGAAGUccgaggGCAGCg -3'
miRNA:   3'- -GCGCCa---GGUgcCCGUGCUUCG------CGUCG- -5'
365 3' -59.7 AC_000011.1 + 8413 0.67 0.314411
Target:  5'- gGCGG--CugGGGCGacgGggGCGguGCc -3'
miRNA:   3'- gCGCCagGugCCCGUg--CuuCGCguCG- -5'
365 3' -59.7 AC_000011.1 + 17699 0.68 0.309812
Target:  5'- gGUGGUCgAUGGGCucgccucgggcaucaACGggGUGguGg -3'
miRNA:   3'- gCGCCAGgUGCCCG---------------UGCuuCGCguCg -5'
365 3' -59.7 AC_000011.1 + 9446 0.68 0.301514
Target:  5'- uGCGGcCCcgcgaggACGGGCGCGccgucaccGagaccaugcgacgccGGCGCGGCg -3'
miRNA:   3'- gCGCCaGG-------UGCCCGUGC--------U---------------UCGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 19868 0.68 0.299281
Target:  5'- aCGuuGUCCAUGGGauccaGCGAccAGCGC-GCc -3'
miRNA:   3'- -GCgcCAGGUGCCCg----UGCU--UCGCGuCG- -5'
365 3' -59.7 AC_000011.1 + 34292 0.68 0.29193
Target:  5'- cCGgGGUCUcuucgcugcaugGCGGGC--GggGCGguGCu -3'
miRNA:   3'- -GCgCCAGG------------UGCCCGugCuuCGCguCG- -5'
365 3' -59.7 AC_000011.1 + 13095 0.68 0.29193
Target:  5'- gCGCGGUCaugucgaGCGcGGCGCuGGGgGUGGCc -3'
miRNA:   3'- -GCGCCAGg------UGC-CCGUGcUUCgCGUCG- -5'
365 3' -59.7 AC_000011.1 + 9811 0.68 0.285436
Target:  5'- cCGC--UCCACGGGCACcuccuccucgcccGCGCGGCc -3'
miRNA:   3'- -GCGccAGGUGCCCGUGcuu----------CGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.