Results 1 - 20 of 283 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 130071 | 0.66 | 0.615929 |
Target: 5'- gGGGGUGgAGagGGCcggggagggggGAgAGCCGCCCg -3' miRNA: 3'- gCCCCGCgUCg-UCG-----------UUgUCGGCGGGg -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 79101 | 0.66 | 0.632396 |
Target: 5'- -cGGGCGCGGCcGCucggcgggcgggagGAgGGCCaGUCCCc -3' miRNA: 3'- gcCCCGCGUCGuCG--------------UUgUCGG-CGGGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 21785 | 0.66 | 0.615929 |
Target: 5'- gGGGGaCGCcggGGagGGCGcCGGCCgagGCCCCg -3' miRNA: 3'- gCCCC-GCG---UCg-UCGUuGUCGG---CGGGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 125790 | 0.66 | 0.606255 |
Target: 5'- aGGGGCGCGGCgucgaaGGCGGaucaauccCAGCgaGCUCUc -3' miRNA: 3'- gCCCCGCGUCG------UCGUU--------GUCGg-CGGGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 117691 | 0.66 | 0.625613 |
Target: 5'- uGGaGGCGUuuaucauGUAG--ACGGCCGCCCg -3' miRNA: 3'- gCC-CCGCGu------CGUCguUGUCGGCGGGg -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 60191 | 0.66 | 0.654667 |
Target: 5'- uCGGGGCcCAGaCcGCccuGCGGCUGaCCCUg -3' miRNA: 3'- -GCCCCGcGUC-GuCGu--UGUCGGC-GGGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 139564 | 0.66 | 0.635303 |
Target: 5'- aGGGGUGCAGgaAGCAAaaaAGCUagGCCa- -3' miRNA: 3'- gCCCCGCGUCg-UCGUUg--UCGG--CGGgg -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 50556 | 0.66 | 0.606255 |
Target: 5'- uGGcGGUGgAGUGcccgcGCAACccggucagGGCCGCCCCc -3' miRNA: 3'- gCC-CCGCgUCGU-----CGUUG--------UCGGCGGGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 147665 | 0.66 | 0.615929 |
Target: 5'- uGGGaaGCGCGGC--CGGgAGCCGCUCUg -3' miRNA: 3'- gCCC--CGCGUCGucGUUgUCGGCGGGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 56785 | 0.66 | 0.606255 |
Target: 5'- cCGGGG-GUAGCGcGCcuACuGGCCGUUCCa -3' miRNA: 3'- -GCCCCgCGUCGU-CGu-UG-UCGGCGGGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 59735 | 0.66 | 0.603356 |
Target: 5'- aGGGGCGUcgAGgGGCccguggcccccgggGGCgAGgCGCCCCc -3' miRNA: 3'- gCCCCGCG--UCgUCG--------------UUG-UCgGCGGGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 14844 | 0.66 | 0.633365 |
Target: 5'- gCGGGGauuuccuguGCAGC--CGGCCGCCUCc -3' miRNA: 3'- -GCCCCgcgu-----CGUCGuuGUCGGCGGGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 181551 | 0.66 | 0.633365 |
Target: 5'- gCGGGGauuuccuguGCAGC--CGGCCGCCUCc -3' miRNA: 3'- -GCCCCgcgu-----CGUCGuuGUCGGCGGGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 37225 | 0.66 | 0.639178 |
Target: 5'- aGGGGCuggcagacauauuggGCAgGCGGguGgAGUgCGCCCCc -3' miRNA: 3'- gCCCCG---------------CGU-CGUCguUgUCG-GCGGGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 120145 | 0.66 | 0.615929 |
Target: 5'- gCGGGG-GCAcCAGCcuCAGCagGUCCCu -3' miRNA: 3'- -GCCCCgCGUcGUCGuuGUCGg-CGGGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 77947 | 0.66 | 0.635303 |
Target: 5'- gCGGGG-GCGGCuGCGaggcaccgagggGCcGUCGCgCCCa -3' miRNA: 3'- -GCCCCgCGUCGuCGU------------UGuCGGCG-GGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 132611 | 0.66 | 0.615929 |
Target: 5'- gCGGaGGCGCuGGCccccaaccuGCAgGCGGCCuCCCCc -3' miRNA: 3'- -GCC-CCGCG-UCGu--------CGU-UGUCGGcGGGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 79464 | 0.66 | 0.625613 |
Target: 5'- gCGGGGCGUGGaccCucUGGCUGCCCUg -3' miRNA: 3'- -GCCCCGCGUCgucGuuGUCGGCGGGG- -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 109669 | 0.66 | 0.606255 |
Target: 5'- uGGucuGC-CAGaccCAGCAGCAGCUGCCCa -3' miRNA: 3'- gCCc--CGcGUC---GUCGUUGUCGGCGGGg -5' |
|||||||
3660 | 3' | -63.1 | NC_001650.1 | + | 102571 | 0.66 | 0.625613 |
Target: 5'- ----cCGCAGCAGCAggcGCAGaCGCCCUc -3' miRNA: 3'- gccccGCGUCGUCGU---UGUCgGCGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home