miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3660 3' -63.1 NC_001650.1 + 57461 1.11 0.000554
Target:  5'- gCGGGGCGCAGCAGCAACAGCCGCCCCa -3'
miRNA:   3'- -GCCCCGCGUCGUCGUUGUCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 110541 0.88 0.026959
Target:  5'- aGcGGGCGC-GCgAGCAACAGCCGCCCCc -3'
miRNA:   3'- gC-CCCGCGuCG-UCGUUGUCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 110706 0.81 0.07712
Target:  5'- aGcGGGCaggccaggcugccGCAGCAGCAACAGCCucagcaGCCCCa -3'
miRNA:   3'- gC-CCCG-------------CGUCGUCGUUGUCGG------CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 21963 0.81 0.079295
Target:  5'- gGGGGCGCcGCAGCuguuGCUGCCCCc -3'
miRNA:   3'- gCCCCGCGuCGUCGuuguCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 155751 0.81 0.0834
Target:  5'- aGGGGCucgguGCAGCcgGGCAggcacagcACGGCCGCCCCc -3'
miRNA:   3'- gCCCCG-----CGUCG--UCGU--------UGUCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 46514 0.8 0.096965
Target:  5'- uCGGGGC-CGGCGGCGAcCGGgCGCCCUg -3'
miRNA:   3'- -GCCCCGcGUCGUCGUU-GUCgGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 89217 0.79 0.101933
Target:  5'- aGGGcGgGCGGCGGCAACuGCUgGCCCCu -3'
miRNA:   3'- gCCC-CgCGUCGUCGUUGuCGG-CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 46362 0.79 0.109837
Target:  5'- cCGGGGCGCGGCGccGCAuCGGCCGCggggcaCCa -3'
miRNA:   3'- -GCCCCGCGUCGU--CGUuGUCGGCGg-----GG- -5'
3660 3' -63.1 NC_001650.1 + 89429 0.79 0.109837
Target:  5'- aGGGGC-CAGCAGUuGCcGCCGCCCg -3'
miRNA:   3'- gCCCCGcGUCGUCGuUGuCGGCGGGg -5'
3660 3' -63.1 NC_001650.1 + 165099 0.78 0.133802
Target:  5'- gGGGGUGgGGUGGCGGCGGCgCGCUCUa -3'
miRNA:   3'- gCCCCGCgUCGUCGUUGUCG-GCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 22479 0.77 0.140163
Target:  5'- aCGGGaGCGCGGCgccgcccGGCAugGGCCccgccucgagGCCCCa -3'
miRNA:   3'- -GCCC-CGCGUCG-------UCGUugUCGG----------CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 131856 0.77 0.140505
Target:  5'- gGGGGCGC-GCAGgcaGGCGGCCGCCa- -3'
miRNA:   3'- gCCCCGCGuCGUCg--UUGUCGGCGGgg -5'
3660 3' -63.1 NC_001650.1 + 78777 0.77 0.147516
Target:  5'- gGGGGCgGCAGCGGgGACGagaucGCCGCCgCg -3'
miRNA:   3'- gCCCCG-CGUCGUCgUUGU-----CGGCGGgG- -5'
3660 3' -63.1 NC_001650.1 + 51007 0.77 0.151139
Target:  5'- gGGGGCGCgGGC-GCGGCGGCC-CCCUc -3'
miRNA:   3'- gCCCCGCG-UCGuCGUUGUCGGcGGGG- -5'
3660 3' -63.1 NC_001650.1 + 110598 0.77 0.154469
Target:  5'- aGGGGCcgccccaGCAGCaacAGCAGCAGCgGaCCCCc -3'
miRNA:   3'- gCCCCG-------CGUCG---UCGUUGUCGgC-GGGG- -5'
3660 3' -63.1 NC_001650.1 + 58939 0.76 0.174205
Target:  5'- uGGGGCGCgggaggcccgggaGGCGGCGGCGGCUucuggcacggGCCCg -3'
miRNA:   3'- gCCCCGCG-------------UCGUCGUUGUCGG----------CGGGg -5'
3660 3' -63.1 NC_001650.1 + 147728 0.76 0.174622
Target:  5'- aGGGuGUGCAGCcGCAGCGuGCCGCCa- -3'
miRNA:   3'- gCCC-CGCGUCGuCGUUGU-CGGCGGgg -5'
3660 3' -63.1 NC_001650.1 + 45404 0.76 0.174622
Target:  5'- aGGGuGUGCAGCcGCAGCGuGCCGCCa- -3'
miRNA:   3'- gCCC-CGCGUCGuCGUUGU-CGGCGGgg -5'
3660 3' -63.1 NC_001650.1 + 116074 0.76 0.183146
Target:  5'- -aGGGUGUuaaacAGCAGC-GCGGCCGCCCUc -3'
miRNA:   3'- gcCCCGCG-----UCGUCGuUGUCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 78172 0.75 0.187544
Target:  5'- gGuGGGCGCGacggccccucGguGCcucGCAGCCGCCCCc -3'
miRNA:   3'- gC-CCCGCGU----------CguCGu--UGUCGGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.